Publications by authors named "Jonathan D Mitchell"

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Convergence-Divergence Models: Generalizations of Phylogenetic Trees Modeling Gene Flow Over Time.
Jonathan D Mitchell, Barbara R Holland

Bull Math Biol· December 2025

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A seasonal aggregation of juvenile scalloped hammerheads Sphyrna lewini along beaches of the Gold Coast, Australia.
Nicolas Lubitz, Kerryn Doupain, Siobhan Houlihan, Jonathan D Mitchell

J Fish Biol· October 2025

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From Trees to Traits: A Review of Advances in PhyloG2P Methods and Future Directions.
Arlie R Macdonald, Maddie E James, Jonathan D Mitchell, Barbara R Holland

Genome Biol Evol· September 2025

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TINNiK: inference of the tree of blobs of a species network under the coalescent model.
Elizabeth S Allman, Hector Baños, Jonathan D Mitchell, John A Rhodes

Algorithms Mol Biol· November 2024

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From little things big things grow: enhancement of an acoustic telemetry network to monitor broad-scale movements of marine species along Australia's east coast.
Adam Barnett, Fabrice R A Jaine, Stacy L Bierwagen, Nicolas Lubitz, Kátya Abrantes, Jonathan D Mitchell

Mov Ecol· April 2024

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TINNiK: Inference of the Tree of Blobs of a Species Network Under the Coalescent.
Elizabeth S Allman, Hector Baños, Jonathan D Mitchell, John A Rhodes

bioRxiv· April 2024

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Diet high in linoleic acid dysregulates the intestinal endocannabinoid system and increases susceptibility to colitis in Mice.
Poonamjot Deol, Paul Ruegger, Geoffrey D Logan, Ali Shawki, Jiang Li, Jonathan D Mitchell

Gut Microbes· July 2023

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The tree of blobs of a species network: identifiability under the coalescent.
Elizabeth S Allman, Hector Baños, Jonathan D Mitchell, John A Rhodes

J Math Biol· December 2022

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Factors Affecting Shark Detection from Drone Patrols in Southeast Queensland, Eastern Australia.
Jonathan D Mitchell, Tracey B Scott-Holland, Paul A Butcher

Biology (Basel)· October 2022

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Gene Tree Discord, Simplex Plots, and Statistical Tests under the Coalescent.
Elizabeth S Allman, Jonathan D Mitchell, John A Rhodes

Syst Biol· June 2022

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Convergence of Olfactory Inputs within the Central Nervous System of a Cartilaginous and a Bony Fish: An Anatomical Indicator of Olfactory Sensitivity.
Victoria Camilieri-Asch, Kara E Yopak, Alethea Rea, Jonathan D Mitchell, Julian C Partridge

Brain Behav Evol· October 2021

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MSCquartets 1.0: quartet methods for species trees and networks under the multispecies coalescent model in R.
John A Rhodes, Hector Baños, Jonathan D Mitchell, Elizabeth S Allman

Bioinformatics· July 2021

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The autoimmune susceptibility gene, , restricts expansion of a novel mouse adherent-invasive .
Ali Shawki, Rocio Ramirez, Marianne R Spalinger, Paul M Ruegger, Anica Sayoc-Becerra, Jonathan D Mitchell

Gut Microbes· November 2020

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Letter: pre-emptive TIPSS for variceal bleeding-patient selection is key.
Tehara Wickremeratne, Jonathan D Mitchell, James O'Beirne

Aliment Pharmacol Ther· August 2020

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Interpersonal Gut Microbiome Variation Drives Susceptibility and Resistance to Cholera Infection.
Salma Alavi, Jonathan D Mitchell, Jennifer Y Cho, Rui Liu, John C Macbeth

Cell· June 2020

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Hypothesis testing near singularities and boundaries.
Jonathan D Mitchell, Elizabeth S Allman, John A Rhodes

Electron J Stat· June 2019

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Distinguishing Between Convergent Evolution and Violation of the Molecular Clock for Three Taxa.
Jonathan D Mitchell, Jeremy G Sumner, Barbara R Holland

Syst Biol· September 2018

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