Publications by authors named "Jonathan D Oakley"

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Deep Learning-Based Segmentation of Geographic Atrophy: A Multi-Center, Multi-Device Validation in a Real-World Clinical Cohort.
Hasenin Al-Khersan, Simrat K Sodhi, Jessica A Cao, Stanley M Saju, Niveditha Pattathil, Jonathan D Oakley

Diagnostics (Basel)· October 2025

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Deep Learning Model for Automated Classification of Macular Neovascularization Subtypes in AMD.
Giovanni Neri, Chiara Rebecchi, Jonathan D Oakley, Chiara Olivieri, Federico Ricardi

Invest Ophthalmol Vis Sci· July 2025

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Deep learning model for automatic detection of different types of microaneurysms in diabetic retinopathy.
Giovanni Neri, Sohum Sharma, Beatrice Ghezzo, Cristina Novarese, Chiara Olivieri, Jonathan D Oakley

Eye (Lond)· February 2025

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Topographical Quantification of Retinal Fluid in Type 3 MNV and Associations With Short-Term Visual Outcomes.
Alessandro Berni, Jonathan D Oakley, Rosa Dolz-Marco, Roberto Gallego-Pinazo, Francesca Cimorosi

Am J Ophthalmol· January 2025

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Machine Learning Quantification of Fluid Volume in Eyes With Retinal Vein Occlusion Treated With Aflibercept: The REVOLT Study.
Mohammad A Khan, Simrat K Sodhi, Samantha Orr, John Golding, Austin Pereira, Jonathan D Oakley

J Vitreoretin Dis· December 2024

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Remission of corneal and peripheral neuropathy after bariatric surgery in people with diabetes.
Stuti L Misra, James A Slater, Rahul Makam, Geoffrey D Braatvedt, Grant Beban, Jonathan D Oakley

Ocul Surf· October 2024

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Deep-learning based automated quantification of critical optical coherence tomography features in neovascular age-related macular degeneration.
Enrico Borrelli, Jonathan D Oakley, Giorgio Iaccarino, Daniel B Russakoff, Marco Battista

Eye (Lond)· February 2024

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QUANTITATIVE ASSESSMENT OF AUTOMATED OPTICAL COHERENCE TOMOGRAPHY IMAGE ANALYSIS USING A HOME-BASED DEVICE FOR SELF-MONITORING NEOVASCULAR AGE-RELATED MACULAR DEGENERATION.
Jonathan D Oakley, Steven Verdooner, Daniel B Russakoff, Alexander J Brucker, John Seaman

Retina· March 2023

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Corneal Nerve Changes Observed by In Vivo Confocal Microscopy in Patients Receiving Oxaliplatin for Colorectal Cancer: The COCO Study.
Ellen F Tyler, Charles N J McGhee, Benjamin Lawrence, Geoffrey D Braatvedt, Joseph L Mankowski, Jonathan D Oakley

J Clin Med· August 2022

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Proof-of-Concept Analysis of a Deep Learning Model to Conduct Automated Segmentation of OCT Images for Macular Hole Volume.
Austin Pereira, Jonathan D Oakley, Simrat K Sodhi, Daniel B Russakoff, Netan Choudhry

Ophthalmic Surg Lasers Imaging Retina· April 2022

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Utilization of deep learning to quantify fluid volume of neovascular age-related macular degeneration patients based on swept-source OCT imaging: The ONTARIO study.
Simrat K Sodhi, Austin Pereira, Jonathan D Oakley, John Golding, Carmelina Trimboli

PLoS One· March 2022

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Combining In Vivo Corneal Confocal Microscopy With Deep Learning-Based Analysis Reveals Sensory Nerve Fiber Loss in Acute Simian Immunodeficiency Virus Infection.
Megan E McCarron, Rachel L Weinberg, Jessica M Izzi, Suzanne E Queen, Patrick M Tarwater, Jonathan D Oakley

Cornea· May 2021

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Deep learning-based analysis of macaque corneal sub-basal nerve fibers in confocal microscopy images.
Jonathan D Oakley, Daniel B Russakoff, Megan E McCarron, Rachel L Weinberg, Jessica M Izzi

Eye Vis (Lond)· May 2020

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A 3D Deep Learning System for Detecting Referable Glaucoma Using Full OCT Macular Cube Scans.
Daniel B Russakoff, Suria S Mannil, Jonathan D Oakley, An Ran Ran, Carol Y Cheung

Transl Vis Sci Technol· February 2020

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Changes in volume of various retinal layers over time in early and intermediate age-related macular degeneration.
Ali Lamin, Jonathan D Oakley, Adam M Dubis, Daniel B Russakoff, Sobha Sivaprasad

Eye (Lond)· March 2019

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Deep Learning for Prediction of AMD Progression: A Pilot Study.
Daniel B Russakoff, Ali Lamin, Jonathan D Oakley, Adam M Dubis, Sobha Sivaprasad

Invest Ophthalmol Vis Sci· February 2019

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Changes in macular layers in the early course of non-arteritic ischaemic optic neuropathy.
Johannes Keller, Jonathan D Oakley, Daniel B Russakoff, Magí Andorrà-Inglés, Pablo Villoslada

Graefes Arch Clin Exp Ophthalmol· March 2016

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Loss of corneal sensory nerve fibers in SIV-infected macaques: an alternate approach to investigate HIV-induced PNS damage.
Jamie L Dorsey, Lisa M Mangus, Jonathan D Oakley, Sarah E Beck, Kathleen M Kelly

Am J Pathol· June 2014

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Active MS is associated with accelerated retinal ganglion cell/inner plexiform layer thinning.
John N Ratchford, Shiv Saidha, Elias S Sotirchos, Jiwon A Oh, Michaela A Seigo, Jonathan D Oakley

Neurology· January 2013

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Relationships between retinal axonal and neuronal measures and global central nervous system pathology in multiple sclerosis.
Shiv Saidha, Elias S Sotirchos, Jiwon Oh, Stephanie B Syc, Michaela A Seigo, Jonathan D Oakley

JAMA Neurol· January 2013

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In vivo assessment of retinal neuronal layers in multiple sclerosis with manual and automated optical coherence tomography segmentation techniques.
Michaela A Seigo, Elias S Sotirchos, Scott Newsome, Aleksandra Babiarz, Christopher Eckstein, Jonathan D Oakley

J Neurol· October 2012

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Optical coherence tomography segmentation reveals ganglion cell layer pathology after optic neuritis.
Stephanie B Syc, Shiv Saidha, Scott D Newsome, John N Ratchford, Michael Levy, Jonathan D Oakley

Brain· February 2012

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Visual dysfunction in multiple sclerosis correlates better with optical coherence tomography derived estimates of macular ganglion cell layer thickness than peripapillary retinal nerve fiber layer thickness.
Shiv Saidha, Stephanie B Syc, Mary K Durbin, Christopher Eckstein, Jonathan D Oakley

Mult Scler· December 2011

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Macular ganglion cell-inner plexiform layer: automated detection and thickness reproducibility with spectral domain-optical coherence tomography in glaucoma.
Jean-Claude Mwanza, Jonathan D Oakley, Donald L Budenz, Robert T Chang, O'Rese J Knight

Invest Ophthalmol Vis Sci· October 2011

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Comparison of automated analysis of Cirrus HD OCT spectral-domain optical coherence tomography with stereo photographs of the optic disc.
Ashish Sharma, Jonathan D Oakley, Joyce C Schiffman, Donald L Budenz, Douglas R Anderson

Ophthalmology· July 2011

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