Publications by authors named "Jonathan D Rosen"

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Uniform processing and analysis of IGVF massively parallel reporter assay data with MPRAsnakeflow.
Jonathan D Rosen, Arjun Devadas Vasanthakumari, Kilian Salomon, Nikola de Lange, Pyaree Mohan Dash

bioRxiv· September 2025

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Impact of COVID-19 on Healthcare Workers in Massachusetts in 2020.
Devan Hawkins, Judith Pare, Christine Pontus, Alfred DeMaria, Laura Punnett, Jonathan D Rosen

New Solut· August 2025

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Higher eQTL power reveals signals that boost GWAS colocalization.
Jonathan D Rosen, K Alaine Broadaway, Sarah M Brotman, Karen L Mohlke, Michael I Love

bioRxiv· August 2025

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Genetic effects on chromatin accessibility uncover mechanisms of liver gene regulation and quantitative traits.
Kevin W Currin, Hannah J Perrin, Gautam K Pandey, Abdalla A Alkhawaja, Swarooparani Vadlamudi, Jonathan D Rosen

Genome Res· July 2025

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TBC1D30 regulates proinsulin and insulin secretion and is the target of a genomic association signal for proinsulin.
Victoria A Parsons, Swarooparani Vadlamudi, Kayleigh M Voos, Abigail E Rohy, Anne H Moxley, Jonathan D Rosen

Diabetologia· June 2025

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Using individual barcodes to increase quantification power of massively parallel reporter assays.
Pia Keukeleire, Jonathan D Rosen, Angelina Göbel-Knapp, Kilian Salomon, Max Schubach

BMC Bioinformatics· February 2025

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Liver eQTL meta-analysis illuminates potential molecular mechanisms of cardiometabolic traits.
K Alaine Broadaway, Sarah M Brotman, Jonathan D Rosen, Kevin W Currin, Abdalla A Alkhawaja

Am J Hum Genet· September 2024

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MagicalRsq-X: A cross-cohort transferable genotype imputation quality metric.
Quan Sun, Yingxi Yang, Jonathan D Rosen, Jiawen Chen, Xihao Li

Am J Hum Genet· May 2024

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Cell-Type Composition Affects Adipose Gene Expression Associations With Cardiometabolic Traits.
Sarah M Brotman, Anniina Oravilahti, Jonathan D Rosen, Marcus Alvarez, Sini Heinonen

Diabetes· November 2023

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Rare tandem repeat expansions associate with genes involved in synaptic and neuronal signaling functions in schizophrenia.
Jia Wen, Brett Trost, Worrawat Engchuan, Matthew Halvorsen, Linda M Pallotto, Jonathan David Rosen

Mol Psychiatry· January 2023

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MagicalRsq: Machine-learning-based genotype imputation quality calibration.
Quan Sun, Yingxi Yang, Jonathan D Rosen, Min-Zhi Jiang, Jiawen Chen

Am J Hum Genet· November 2022

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Transcriptome-wide association study in UK Biobank Europeans identifies associations with blood cell traits.
Bryce Rowland, Sanan Venkatesh, Manuel Tardaguila, Jia Wen, Jonathan D Rosen

Hum Mol Genet· July 2022

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Gangs, violence, and fear: punitive Darwinism in El Salvador.
Jonathan D Rosen, Sebastián Cutrona, Katy Lindquist

Crime Law Soc Change· July 2022

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TOP-LD: A tool to explore linkage disequilibrium with TOPMed whole-genome sequence data.
Le Huang, Jonathan D Rosen, Quan Sun, Jiawen Chen, Marsha M Wheeler

Am J Hum Genet· June 2022

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A systematic evaluation of Hi-C data enhancement methods for enhancing PLAC-seq and HiChIP data.
Le Huang, Yuchen Yang, Gang Li, Minzhi Jiang, Jia Wen, Jonathan D Rosen

Brief Bioinform· May 2022

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Leveraging TOPMed imputation server and constructing a cohort-specific imputation reference panel to enhance genotype imputation among cystic fibrosis patients.
Quan Sun, Weifang Liu, Jonathan D Rosen, Le Huang, Rhonda G Pace

HGG Adv· April 2022

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A large-scale transcriptome-wide association study (TWAS) of 10 blood cell phenotypes reveals complexities of TWAS fine-mapping.
Amanda L Tapia, Bryce T Rowland, Jonathan D Rosen, Michael Preuss, Kris Young

Genet Epidemiol· February 2022

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It Is Time to Implement Primary Prevention in the Workplace to Ameliorate the Ongoing U.S. Opioid Epidemic.
Aurora B Le, Jonathan D Rosen

New Solut· November 2021

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HPRep: Quantifying Reproducibility in HiChIP and PLAC-Seq Datasets.
Jonathan D Rosen, Yuchen Yang, Armen Abnousi, Jiawen Chen, Michael Song

Curr Issues Mol Biol· September 2021

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Transcriptome-Wide Association Study of Blood Cell Traits in African Ancestry and Hispanic/Latino Populations.
Jia Wen, Munan Xie, Bryce Rowland, Jonathan D Rosen, Quan Sun

Genes (Basel)· July 2021

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Cell-type-specific 3D epigenomes in the developing human cortex.
Michael Song, Mark-Phillip Pebworth, Xiaoyu Yang, Armen Abnousi, Changxu Fan, Jonathan D Rosen

Nature· November 2020

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Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.
Ming-Huei Chen, Laura M Raffield, Abdou Mousas, Saori Sakaue, Jennifer E Huffman, Jonathan D Rosen

Cell· September 2020

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The Polygenic and Monogenic Basis of Blood Traits and Diseases.
Dragana Vuckovic, Erik L Bao, Parsa Akbari, Caleb A Lareau, Abdou Mousas, Jonathan D Rosen

Cell· September 2020

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Clinical Characteristics of Pain Among Five Chronic Overlapping Pain Conditions.
Richard Ohrbach, Sonia Sharma, Roger B Fillingim, Joel D Greenspan, Jonathan D Rosen

J Oral Facial Pain Headache· September 2020

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Robust Hi-C Maps of Enhancer-Promoter Interactions Reveal the Function of Non-coding Genome in Neural Development and Diseases.
Leina Lu, Xiaoxiao Liu, Wei-Kai Huang, Paola Giusti-Rodríguez, Jian Cui, Jonathan D Rosen

Mol Cell· August 2020

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