Publications by authors named "Jonathan D Williams"

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Characterization of vaginal microbiomes in clinician-collected bacterial vaginosis diagnosed samples.
Hayden N Brochu, Qimin Zhang, Kuncheng Song, Ling Wang, Emily A Deare, Jonathan D Williams

Microbiol Spectr· April 2025

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A program for real-time surveillance of SARS-CoV-2 genetics.
Hayden N Brochu, Kuncheng Song, Qimin Zhang, Qiandong Zeng, Adib Shafi, Jonathan D Williams

Sci Rep· August 2024

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An In Silico Analysis of PCR-Based Monkeypox Virus Detection Assays: A Case Study for Ongoing Clinical Surveillance.
Kuncheng Song, Hayden N Brochu, Qimin Zhang, Jonathan D Williams, Lakshmanan K Iyer

Viruses· November 2023

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Spontaneous deamination of cytosine to uracil is biased to the non-transcribed DNA strand in yeast.
Jonathan D Williams, Demi Zhu, María García-Rubio, Samantha Shaltz, Andrés Aguilera

DNA Repair (Amst)· June 2023

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Genome-wide analysis of heat stress-stimulated transposon mobility in the human fungal pathogen .
Asiya Gusa, Vikas Yadav, Cullen Roth, Jonathan D Williams, Eva Mei Shouse

Proc Natl Acad Sci U S A· January 2023

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Bridging the gap: An approach to reporting antimicrobial stewardship metrics specific to solid organ transplant recipients.
Sage B Greenlee, Tommy J Parraga Acosta, Charles T Makowski, Rachel M Kenney, Mayur Ramesh, Jonathan D Williams

Transpl Infect Dis· October 2022

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Integrin 5 Is Regulated by miR-218-5p in Endothelial Progenitor Cells.
Jialing Liu, Yi Li, Lingna Lyu, Liang Xiao, Aliza A Memon, Jonathan D Williams

J Am Soc Nephrol· March 2022

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Rapid Reorganization of an Academic Infectious Diseases Program During the Coronavirus Disease 2019 Pandemic in Detroit: A Novel Unit-based Group Rounding Model.
Amit T Vahia, Zohra S Chaudhry, Linda Kaljee, Tommy Parraga-Acosta, Smitha Gudipati, Jonathan D Williams

Clin Infect Dis· March 2021

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Clinical characteristics and outcomes of COVID-19 in solid organ transplant recipients: A cohort study.
Zohra S Chaudhry, Jonathan D Williams, Amit Vahia, Raef Fadel, Tommy Parraga Acosta, Celeste Williams

Am J Transplant· November 2020

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Characterization of long G4-rich enhancer-associated genomic regions engaging in a novel loop:loop 'G4 Kissing' interaction.
Jonathan D Williams, Dominika Houserova, Bradley R Johnson, Brad Dyniewski, Alexandra Berroyer

Nucleic Acids Res· June 2020

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Transposon mobilization in the human fungal pathogen is mutagenic during infection and promotes drug resistance in vitro.
Asiya Gusa, Jonathan D Williams, Jang-Eun Cho, Anna Floyd Averette, Sheng Sun

Proc Natl Acad Sci U S A· May 2020

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Sites of instability in the human TCF3 (E2A) gene adopt G-quadruplex DNA structures in vitro.
Jonathan D Williams, Sara Fleetwood, Alexandra Berroyer, Nayun Kim, Erik D Larson

Front Genet· June 2015

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G-quadruplex recognition activities of E. Coli MutS.
Edward A Ehrat, Bradley R Johnson, Jonathan D Williams, Glen M Borchert, Erik D Larson

BMC Mol Biol· July 2012

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Topology of surface diagrams of smooth 4-manifolds.
Jonathan D Williams

Proc Natl Acad Sci U S A· May 2011

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Comprehensive analysis of microRNA genomic loci identifies pervasive repetitive-element origins.
Glen M Borchert, Nathaniel W Holton, Jonathan D Williams, William L Hernan, Ian P Bishop

Mob Genet Elements· May 2011

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