Publications by authors named "Jonathan E Foley"

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Orthogonal control of expression mean and variance by epigenetic features at different genomic loci.
Siddharth S Dey, Jonathan E Foley, Prajit Limsirichai, David V Schaffer, Adam P Arkin

Mol Syst Biol· May 2015

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Engineering customized TALE nucleases (TALENs) and TALE transcription factors by fast ligation-based automatable solid-phase high-throughput (FLASH) assembly.
Deepak Reyon, Morgan L Maeder, Cyd Khayter, Shengdar Q Tsai, Jonathan E Foley

Curr Protoc Mol Biol· July 2013

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Chromatin accessibility at the HIV LTR promoter sets a threshold for NF-κB mediated viral gene expression.
Kathryn Miller-Jensen, Siddharth S Dey, Nhung Pham, Jonathan E Foley, Adam P Arkin

Integr Biol (Camb)· June 2012

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Predicting success of oligomerized pool engineering (OPEN) for zinc finger target site sequences.
Jeffry D Sander, Deepak Reyon, Morgan L Maeder, Jonathan E Foley, Stacey Thibodeau-Beganny

BMC Bioinformatics· November 2010

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HIV promoter integration site primarily modulates transcriptional burst size rather than frequency.
Ron Skupsky, John C Burnett, Jonathan E Foley, David V Schaffer, Adam P Arkin

PLoS Comput Biol· September 2010

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Targeted mutagenesis in zebrafish using customized zinc-finger nucleases.
Jonathan E Foley, Morgan L Maeder, Joseph Pearlberg, J Keith Joung, Randall T Peterson

Nat Protoc· March 2010

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Rapid mutation of endogenous zebrafish genes using zinc finger nucleases made by Oligomerized Pool ENgineering (OPEN).
Jonathan E Foley, Jing-Ruey J Yeh, Morgan L Maeder, Deepak Reyon, Jeffry D Sander

PLoS One· April 2009

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Conformational changes in the solution structure of the dengue virus 5' end in the presence and absence of the 3' untranslated region.
Charlotta Polacek, Jonathan E Foley, Eva Harris

J Virol· January 2009

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Rapid "open-source" engineering of customized zinc-finger nucleases for highly efficient gene modification.
Morgan L Maeder, Stacey Thibodeau-Beganny, Anna Osiak, David A Wright, Reshma M Anthony, Jonathan E Foley

Mol Cell· July 2008

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Unexpected failure rates for modular assembly of engineered zinc fingers.
Cherie L Ramirez, Jonathan E Foley, David A Wright, Felix Müller-Lerch, Shamim H Rahman

Nat Methods· May 2008

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