Publications by authors named "Jonathan Machta"

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Behavior of Ising spins and ecological oscillators on dynamically rewired small-world networks.
Davi Arrais Nobre, Karen C Abbott, Jonathan Machta, Alan Hastings

Phys Rev E· June 2025

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Optimal schedules for annealing algorithms.
Amin Barzegar, Firas Hamze, Christopher Amey, Jonathan Machta

Phys Rev E· June 2024

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Variation in Avian Predation Pressure as a Driver for the Diversification of Periodical Cicada Broods.
William L Huffmyer, Fang Ji, Julie C Blackwood, Alan Hastings, Walter D Koenig, Jonathan Machta

Am Nat· March 2024

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Modeling and prediction of phase shifts in noisy two-cycle oscillations.
Vahini Reddy Nareddy, Jonathan Machta, Karen Abbott, Shadisadat Esmaeili, Alan Hastings

J Math Biol· July 2023

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Noise-induced versus intrinsic oscillation in ecological systems.
Shadisadat Esmaeili, Alan Hastings, Karen C Abbott, Jonathan Machta, Vahini Reddy Nareddy

Ecol Lett· April 2022

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Sharp boundary formation and invasion between spatially adjacent periodical cicada broods.
Geunho Kye, Jonathan Machta, Karen C Abbott, Alan Hastings, William Huffmyer

J Theor Biol· April 2021

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Density dependent Resource Budget Model for alternate bearing.
Shadisadat Esmaeili, Alan Hastings, Karen Abbott, Jonathan Machta, Vahini Reddy Nareddy

J Theor Biol· January 2021

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Dynamical Ising model of spatially coupled ecological oscillators.
Vahini Reddy Nareddy, Jonathan Machta, Karen C Abbott, Shadisadat Esmaeili, Alan Hastings

J R Soc Interface· October 2020

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Kinetic Ising models with self-interaction: Sequential and parallel updating.
Vahini Reddy Nareddy, Jonathan Machta

Phys Rev E· January 2020

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Equilibrium microcanonical annealing for first-order phase transitions.
Nathan Rose, Jonathan Machta

Phys Rev E· December 2019

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Effects of setting temperatures in the parallel tempering Monte Carlo algorithm.
Ignacio Rozada, Maliheh Aramon, Jonathan Machta, Helmut G Katzgraber

Phys Rev E· October 2019

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A Hybrid Model for the Population Dynamics of Periodical Cicadas.
Jonathan Machta, Julie C Blackwood, Andrew Noble, Andrew M Liebhold, Alan Hastings

Bull Math Biol· April 2019

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Competition and Stragglers as Mediators of Developmental Synchrony in Periodical Cicadas.
Julie C Blackwood, Jonathan Machta, Alexander D Meyer, Andrew E Noble, Alan Hastings

Am Nat· October 2018

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Analysis and optimization of population annealing.
Christopher Amey, Jonathan Machta

Phys Rev E· March 2018

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Spatial patterns of tree yield explained by endogenous forces through a correspondence between the Ising model and ecology.
Andrew E Noble, Todd S Rosenstock, Patrick H Brown, Jonathan Machta, Alan Hastings

Proc Natl Acad Sci U S A· February 2018

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Population annealing simulations of a binary hard-sphere mixture.
Jared Callaham, Jonathan Machta

Phys Rev E· June 2017

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Population annealing: Theory and application in spin glasses.
Wenlong Wang, Jonathan Machta, Helmut G Katzgraber

Phys Rev E Stat Nonlin Soft Matter Phys· December 2015

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Comparing Monte Carlo methods for finding ground states of Ising spin glasses: Population annealing, simulated annealing, and parallel tempering.
Wenlong Wang, Jonathan Machta, Helmut G Katzgraber

Phys Rev E Stat Nonlin Soft Matter Phys· July 2015

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Emergent long-range synchronization of oscillating ecological populations without external forcing described by Ising universality.
Andrew E Noble, Jonathan Machta, Alan Hastings

Nat Commun· April 2015

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Correlations between the dynamics of parallel tempering and the free-energy landscape in spin glasses.
Burcu Yucesoy, Jonathan Machta, Helmut G Katzgraber

Phys Rev E Stat Nonlin Soft Matter Phys· January 2013

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Computational study of a multistep height model.
Matthew Drake, Jonathan Machta, Youjin Deng, Douglas Abraham, Charles Newman

Phys Rev E Stat Nonlin Soft Matter Phys· June 2012

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Critical behavior of the Chayes-Machta-Swendsen-Wang dynamics.
Youjin Deng, Timothy M Garoni, Jonathan Machta, Giovanni Ossola, Marco Polin

Phys Rev Lett· August 2007

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Overcoming the slowing down of flat-histogram Monte Carlo simulations: cluster updates and optimized broad-histogram ensembles.
Yong Wu, Mathias Körner, Louis Colonna-Romano, Simon Trebst, Harvey Gould, Jonathan Machta

Phys Rev E Stat Nonlin Soft Matter Phys· October 2005

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Ground states and thermal states of the random field Ising model.
Yong Wu, Jonathan Machta

Phys Rev Lett· September 2005

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Parallel dynamics and computational complexity of network growth models.
Benjamin Machta, Jonathan Machta

Phys Rev E Stat Nonlin Soft Matter Phys· February 2005

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