Publications by authors named "Jop Kind"

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A hitchhiker's guide to single-cell epigenomics: Methods and applications for cancer research.
Marta Moreno-Gonzalez, Isabel Sierra, Jop Kind

Int J Cancer· January 2026

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Retrospective and multifactorial single-cell profiling reveals sequential chromatin reorganization during X inactivation.
Samy Kefalopoulou, Pim M J Rullens, Kim L de Luca, Sandra S de Vries, Tessy Korthout, Jop Kind

Nat Cell Biol· July 2025

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Genome-wide profiling of DNA repair proteins in single cells.
Kim L de Luca, Pim M J Rullens, Magdalena A Karpinska, Sandra S de Vries, Agnieszka Gacek-Matthews, Jop Kind

Nat Commun· November 2024

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Antagonism between H3K27me3 and genome-lamina association drives atypical spatial genome organization in the totipotent embryo.
Isabel Guerreiro, Franka J Rang, Yumiko K Kawamura, Carla Kroon-Veenboer, Jeroen Korving, Jop Kind

Nat Genet· October 2024

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Combinatorial single-cell profiling of major chromatin types with MAbID.
Silke J A Lochs, Robin H van der Weide, Kim L de Luca, Tessy Korthout, Ramada E van Beek, Jop Kind

Nat Methods· January 2024

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The role of heterochromatin in 3D genome organization during preimplantation development.
Franka J Rang, Jop Kind, Isabel Guerreiro

Cell Rep· April 2023

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A pendulum of induction between the epiblast and extra-embryonic endoderm supports post-implantation progression.
Erik J Vrij, Yvonne S Scholte Op Reimer, Laury Roa Fuentes, Isabel Misteli Guerreiro, Viktoria Holzmann, Jop Kind

Development· October 2022

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Nuclear chromosome locations dictate segregation error frequencies.
Sjoerd J Klaasen, My Anh Truong, Richard H van Jaarsveld, Isabella Koprivec, Valentina Štimac, Jop Kind

Nature· July 2022

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Simultaneous Quantification of Spatial Genome Positioning and Transcriptomics in Single Cells with scDam&T-Seq.
Silke J A Lochs, Jop Kind

Methods Mol Biol· July 2022

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Single-cell profiling of transcriptome and histone modifications with EpiDamID.
Franka J Rang, Kim L de Luca, Sandra S de Vries, Christian Valdes-Quezada, Ellen Boele, Jop Kind

Mol Cell· May 2022

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Attach and stretch: Emerging roles for genome-lamina contacts in shaping the 3D genome.
Pim M J Rullens, Jop Kind

Curr Opin Cell Biol· June 2021

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Single-Cell DamID to Capture Contacts Between DNA and the Nuclear Lamina in Individual Mammalian Cells.
Kim L de Luca, Jop Kind

Methods Mol Biol· March 2021

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DamID to Map Genome-Protein Interactions in Preimplantation Mouse Embryos.
Mrinmoy Pal, Jop Kind, Maria-Elena Torres-Padilla

Methods Mol Biol· March 2021

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Simultaneous quantification of protein-DNA interactions and transcriptomes in single cells with scDam&T-seq.
Corina M Markodimitraki, Franka J Rang, Koos Rooijers, Sandra S de Vries, Alex Chialastri, Jop Kind

Nat Protoc· June 2020

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Alcohol-derived DNA crosslinks are repaired by two distinct mechanisms.
Michael R Hodskinson, Alice Bolner, Koichi Sato, Ashley N Kamimae-Lanning, Koos Rooijers, Jop Kind

Nature· March 2020

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Simultaneous quantification of protein-DNA contacts and transcriptomes in single cells.
Koos Rooijers, Corina M Markodimitraki, Franka J Rang, Sandra S de Vries, Alex Chialastri, Jop Kind

Nat Biotechnol· July 2019

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DamC reveals principles of chromatin folding in vivo without crosslinking and ligation.
Josef Redolfi, Yinxiu Zhan, Christian Valdes-Quezada, Mariya Kryzhanovska, Isabel Guerreiro, Jop Kind

Nat Struct Mol Biol· June 2019

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Genome-lamina interactions are established de novo in the early mouse embryo.
Máté Borsos, Sara M Perricone, Tamás Schauer, Julien Pontabry, Kim L de Luca, Jop Kind

Nature· May 2019

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Spatial chromatin organization and gene regulation at the nuclear lamina.
Isabel Guerreiro, Jop Kind

Curr Opin Genet Dev· April 2019

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Lamina Associated Domains and Gene Regulation in Development and Cancer.
Silke J A Lochs, Samy Kefalopoulou, Jop Kind

Cells· March 2019

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Corrigendum: Domains of genome-wide gene expression dysregulation in Down's syndrome.
Audrey Letourneau, Federico A Santoni, Ximena Bonilla, M Reza Sailani, David Gonzalez, Jop Kind

Nature· March 2016

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Genome-wide maps of nuclear lamina interactions in single human cells.
Jop Kind, Ludo Pagie, Sandra S de Vries, Leila Nahidiazar, Siddharth S Dey

Cell· September 2015

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Stochastic genome-nuclear lamina interactions: modulating roles of Lamin A and BAF.
Jop Kind, Bas van Steensel

Nucleus· January 2015

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Differential spatial and structural organization of the X chromosome underlies dosage compensation in C. elegans.
Rahul Sharma, Daniel Jost, Jop Kind, Georgina Gómez-Saldivar, Bas van Steensel

Genes Dev· December 2014

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Domains of genome-wide gene expression dysregulation in Down's syndrome.
Audrey Letourneau, Federico A Santoni, Ximena Bonilla, M Reza Sailani, David Gonzalez, Jop Kind

Nature· April 2014

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