Publications by authors named "Josef Stepanek"

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SERS detection of micro-defects in ultra-low fouling polymer brushes.
Monika Spasovová, Markéta Vrabcová, Ivan Barvík, Milan Houska, Ondřej Kylián

Spectrochim Acta A Mol Biomol Spectrosc· January 2026

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Polymorphic potential of SRF binding site of gene promoter: study.
Barbora Profantová, Václav Římal, Václav Profant, Ondřej Socha, Ivan Barvík

RSC Adv· November 2024

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Magnetron-sputtered Polytetrafluoroethylene-stabilized Silver Nanoisland Surface for Surface-Enhanced Fluorescence.
Martin Šubr, Petr Praus, Eva Kočišová, Marek Procházka, Josef Štěpánek

Nanomaterials (Basel)· April 2020

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Anisotropic Optical Response of Silver Nanorod Arrays: Surface Enhanced Raman Scattering Polarization and Angular Dependences Confronted with Ellipsometric Parameters.
Martin Šubr, Martin Petr, Ondřej Kylián, Josef Štěpánek, Martin Veis

Sci Rep· June 2017

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Testing gold nanostructures fabricated by hole-mask colloidal lithography as potential substrates for SERS sensors: sensitivity, signal variability, and the aspect of adsorbate deposition.
Vlastimil Peksa, Petra Lebrušková, Hana Šípová, Josef Štěpánek, Jiří Bok

Phys Chem Chem Phys· July 2016

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DNA Electric Charge Oscillations Govern Protein-DNA Recognition.
Josef Štěpánek, Vladimír Kopecký, Pierre-Yves Turpin, Zhenlin Li, Bernard Alpert

PLoS One· February 2016

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Organization of the MADS box from human SRF revealed by tyrosine perturbation.
Barbora Profantová, Yves-Marie Coïc, Václav Profant, Josef Štěpánek, Vladimír Kopecký

J Phys Chem B· February 2015

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5'-O-Methylphosphonate nucleic acids--new modified DNAs that increase the Escherichia coli RNase H cleavage rate of hybrid duplexes.
Hana Šipova, Tomaš Špringer, Dominik Rejman, Ondřej Šimak, Magdalena Petrová

Nucleic Acids Res· April 2014

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Protonation effect of tyrosine in a segment of the SRF transcription factor: a combined optical spectroscopy, molecular dynamics, and density functional theory calculation study.
Barbora Profantová, Václav Profant, Vlastimil Zíma, Vladimír Kopecký, Lucie Bednárová

J Phys Chem B· December 2013

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Raman spectroscopy of proteins and nucleoproteins.
Daniel Nemecek, Josef Stepanek, George J Thomas

Curr Protoc Protein Sci· July 2013

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Structural changes of human RNase L upon homodimerization investigated by Raman spectroscopy.
Martin Kříž, Jan Snášel, Vladimír Kopecký, Ondřej Páv, Ivan Rosenberg

Biochim Biophys Acta· September 2012

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A dual surface plasmon resonance assay for the determination of ribonuclease H activity.
Hana Sípová, Hana Vaisocherová, Josef Stěpánek, Jiří Homola

Biosens Bioelectron· December 2010

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Shielding effect of monovalent and divalent cations on solid-phase DNA hybridization: surface plasmon resonance biosensor study.
Tomás Springer, Hana Sípová, Hana Vaisocherová, Josef Stepánek, Jirí Homola

Nucleic Acids Res· November 2010

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Structural and dynamic changes of the serum response element and the core domain of serum response factor induced by their association.
Josef Stepánek, Vladimír Kopecký, Alberto Mezzetti, Pierre-Yves Turpin, Denise Paulin

Biochem Biophys Res Commun· January 2010

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Surface plasmon resonance study on HIV-1 integrase strand transfer activity.
Hana Vaisocherová, Jan Snásel, Tomás Springer, Hana Sípová, Ivan Rosenberg

Anal Bioanal Chem· February 2009

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Time-resolved microspectrofluorometry and fluorescence imaging techniques: study of porphyrin-mediated cellular uptake of oligonucleotides.
Petr Praus, Eva Kocisová, Peter Mojzes, Josef Stepánek, Olivier Seksek

Ann N Y Acad Sci· July 2008

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SERS-activating effect of chlorides on borate-stabilized silver nanoparticles: formation of new reduced adsorption sites and induced nanoparticle fusion.
Ivana Sloufová, Karolína Sisková, Blanka Vlcková, Josef Stepánek

Phys Chem Chem Phys· April 2008

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C-->G base mutations in the CArG box of c-fos serum response element alter its bending flexibility. Consequences for core-SRF recognition.
Josef Stepanek, Michel Vincent, Pierre-Yves Turpin, Denise Paulin, Serge Fermandjian

FEBS J· May 2007

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Investigating oligonucleotide hybridization at subnanomolar level by surface plasmon resonance biosensor method.
Hana Vaisocherová, Alice Zítová, Markéta Lachmanová, Josef Stepánek, Sárka Králíková

Biopolymers· July 2006

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Surface-enhanced resonance Raman scattering of porphyrins on gold nanoparticles attached to silanized glass plates.
Marek Procházka, Natália Hajduková, Josef Stepánek

Biopolymers· July 2006

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Structural features of a central mismatch in oligonucleotide hybrid duplexes visualized via Raman spectroscopy: model system for evaluation of potential "antisense" drugs.
Daniel Nemecek, Hana Vaisocherová, Josef Stepánek, Pierre-Yves Turpin

Biopolymers· September 2005

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Probing of porphyrin surface chemistry in systems with laser-ablated Ag nanoparticle hydrosol: role of thiosulfate anions.
Marek Procházka, Blanka Vlcková, Josef Stepánek, Pierre-Yves Turpin

Langmuir· March 2005

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Interaction of phospholipid dispersions with water-soluble porphyrins as monitored by their Raman temperature profiles.
Marek Procházka, Josef Stĕpánek, Pierre-Yves Turpin

Chem Phys Lipids· December 2004

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Intracellular uptake of modified oligonucleotide studied by two fluorescence techniques.
Eva Kocisová, Petr Praus, Ivan Rosenberg, Olivier Seksek, Franck Sureau

Biopolymers· July 2004

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Raman study of potential "antisense" drugs: nonamer oligonucleotide duplexes with a central mismatch as a model system for the binding selectivity evaluation.
Daniel Nemecek, Josef Stepanek, Pierre-Yves Turpin, Ivan Rosenberg

Biopolymers· July 2004

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