Publications by authors named "Joseph D Manthey"

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Waves of Colonization and Gene Flow in a Great Speciator.
Ethan F Gyllenhaal, Serina S Brady, Lucas H DeCicco, Alivereti Naikatini, Paul M Hime, Joseph D Manthey

Syst Biol· November 2025

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Genomic resources for comparative analyses of obligate avian brood parasitism.
Rachel A Carroll, Edward S Ricemeyer, LaDeana W Hillier, Jeffrey M DaCosta, Ekaterina Osipova, Joseph D Manthey

J Hered· November 2025

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Efficient Inference of Macrophylogenies: Insights from the Avian Tree of Life.
Min Zhao, Gregory Thom, Brant C Faircloth, Michael J Andersen, F Keith Barker, Joseph D Manthey

Syst Biol· November 2025

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Temporal Genomics Reveal a Century of Genomic Diversity Shifts Across a Biodiversity Hotspot Avian Assemblage.
Joseph D Manthey, Amie E Settlecowski, Yonas Meheretu, Garrett J Behrends, Yann Bourgeois

Genome Biol Evol· September 2025

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Genomic resources for comparative analyses of obligate avian brood parasitism.
Rachel A Carroll, Edward S Ricemeyer, LaDeana W Hillier, Jeffrey M DaCosta, Ekaterina Osipova, Joseph D Manthey

bioRxiv· August 2025

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Island size shapes genomic diversity in a great speciator (Aves: ).
Ethan F Gyllenhaal, Michael J Andersen, Robert G Moyle, Joseph D Manthey

Biol Lett· March 2025

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Species distribution models predict genetic isolation of Hagen in Selys, 1853 (Odonata, Calopterygidae).
Austin R Biddy, Joseph D Manthey, Jessica L Ware, Nancy E McIntyre

Ecol Evol· August 2024

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Recombination rate variation shapes genomic variability of phylogeographic structure in a widespread North American songbird (Aves: Certhia americana).
Joseph D Manthey, Garth M Spellman

Mol Phylogenet Evol· July 2024

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Waves of Colonization and Gene Flow in a Great Speciator.
Ethan F Gyllenhaal, Serina S Brady, Lucas H DeCicco, Alivereti Naikatini, Paul M Hime, Joseph D Manthey

bioRxiv· July 2024

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Library preparation method and DNA source influence endogenous DNA recovery from 100-year-old avian museum specimens.
Amie E Settlecowski, Ben D Marks, Joseph D Manthey

Ecol Evol· August 2023

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Impact of host demography and evolutionary history on endosymbiont molecular evolution: A test in carpenter ants (genus ) and their endosymbionts.
Joseph D Manthey, Jennifer C Girón, Jack P Hruska

Ecol Evol· July 2022

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Varied diversification patterns and distinct demographic trajectories in Ethiopian montane forest bird (Aves: Passeriformes) populations separated by the Great Rift Valley.
Joseph D Manthey, Yann Bourgeois, Yonas Meheretu, Stéphane Boissinot

Mol Ecol· May 2022

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Population connectivity across a highly fragmented distribution: Phylogeography of the Chalcophaps doves.
Devon A DeRaad, Joseph D Manthey, Emily N Ostrow, Lucas H DeCicco, Michael J Andersen

Mol Phylogenet Evol· January 2022

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The Genomic Signature of Allopatric Speciation in a Songbird Is Shaped by Genome Architecture (Aves: Certhia americana).
Joseph D Manthey, John Klicka, Garth M Spellman

Genome Biol Evol· August 2021

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De novo assembly of a chromosome-scale reference genome for the northern flicker Colaptes auratus.
Jack P Hruska, Joseph D Manthey

G3 (Bethesda)· January 2021

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Genomic differentiation in an endemic Philippine genus (Aves: ) owing to geographical isolation on recently disassociated islands.
Luke C Campillo, Joseph D Manthey, Robert C Thomson, Peter A Hosner, Robert G Moyle

Biol J Linn Soc Lond· December 2020

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Gene flow and rapid differentiation characterize a rapid insular radiation in the southwest Pacific (Aves: Zosterops).
Joseph D Manthey, Carl H Oliveros, Michael J Andersen, Christopher E Filardi, Robert G Moyle

Evolution· August 2020

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Recent Secondary Contacts, Linked Selection, and Variable Recombination Rates Shape Genomic Diversity in the Model Species Anolis carolinensis.
Yann Bourgeois, Robert P Ruggiero, Joseph D Manthey, Stéphane Boissinot

Genome Biol Evol· July 2019

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Mitochondrial genomes of the bird genus : rates of sequence evolution, and discordance between mitochondrial and nuclear markers.
Luke C Campillo, Kevin J Burns, Robert G Moyle, Joseph D Manthey

Mitochondrial DNA B Resour· July 2019

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The Mobilome of Reptiles: Evolution, Structure, and Function.
Stéphane Boissinot, Yann Bourgeois, Joseph D Manthey, Robert P Ruggiero

Cytogenet Genome Res· May 2019

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Multiple and Independent Phases of Transposable Element Amplification in the Genomes of Piciformes (Woodpeckers and Allies).
Joseph D Manthey, Robert G Moyle, Stéphane Boissinot

Genome Biol Evol· June 2018

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Diversification of African tree frogs (genus Leptopelis) in the highlands of Ethiopia.
Jacobo Reyes-Velasco, Joseph D Manthey, Xenia Freilich, Stéphane Boissinot

Mol Ecol· May 2018

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Revisiting the phylogeography, demography and taxonomy of the frog genus Ptychadena in the Ethiopian highlands with the use of genome-wide SNP data.
Jacobo Reyes-Velasco, Joseph D Manthey, Yann Bourgeois, Xenia Freilich, Stéphane Boissinot

PLoS One· March 2018

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A genome-wide assessment of stages of elevational parapatry in Bornean passerine birds reveals no introgression: implications for processes and patterns of speciation.
Robert G Moyle, Joseph D Manthey, Peter A Hosner, Mustafa Rahman, Maklarin Lakim

PeerJ· May 2017

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Diversification in wild populations of the model organism : A genome-wide phylogeographic investigation.
Joseph D Manthey, Marc Tollis, Alan R Lemmon, Emily Moriarty Lemmon, Stéphane Boissinot

Ecol Evol· November 2016

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