Publications by authors named "Joseph Vineis"

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A novel conjugative transposon carrying an autonomously amplified plasmid.
Joseph H Vineis, William S Reznikoff, Dionysios A Antonopoulos, Jason Koval, Eugene Chang

mBio· February 2024

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Diversity at single nucleotide to pangenome scales among sulfur cycling bacteria in salt marshes.
Sherlynette Pérez Castro, Elena L Peredo, Olivia U Mason, Joseph Vineis, Jennifer L Bowen

Appl Environ Microbiol· November 2023

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Microbial chemolithoautotrophs are abundant in salt marsh sediment following long-term experimental nitrate enrichment.
Joseph H Vineis, Ashley N Bulseco, Jennifer L Bowen

FEMS Microbiol Lett· January 2023

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Sulphide addition favours respiratory ammonification (DNRA) over complete denitrification and alters the active microbial community in salt marsh sediments.
Anna E Murphy, Ashley N Bulseco, Ross Ackerman, Joseph H Vineis, Jennifer L Bowen

Environ Microbiol· June 2020

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The Toxicogenome of Hyalella azteca: A Model for Sediment Ecotoxicology and Evolutionary Toxicology.
Helen C Poynton, Simone Hasenbein, Joshua B Benoit, Maria S Sepulveda, Monica F Poelchau, Joseph H Vineis

Environ Sci Technol· May 2018

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Patient-Specific Bacteroides Genome Variants in Pouchitis.
Joseph H Vineis, Daina L Ringus, Hilary G Morrison, Tom O Delmont, Sushila Dalal

mBio· November 2016

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Genome reconstructions indicate the partitioning of ecological functions inside a phytoplankton bloom in the Amundsen Sea, Antarctica.
Tom O Delmont, A Murat Eren, Joseph H Vineis, Anton F Post

Front Microbiol· November 2015

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Comparison of Sewage and Animal Fecal Microbiomes by Using Oligotyping Reveals Potential Human Fecal Indicators in Multiple Taxonomic Groups.
Jenny C Fisher, A Murat Eren, Hyatt C Green, Orin C Shanks, Hilary G Morrison, Joseph H Vineis

Appl Environ Microbiol· October 2015

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Anvi'o: an advanced analysis and visualization platform for 'omics data.
A Murat Eren, Özcan C Esen, Christopher Quince, Joseph H Vineis, Hilary G Morrison

PeerJ· October 2015

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Minimum entropy decomposition: unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences.
A Murat Eren, Hilary G Morrison, Pamela J Lescault, Julie Reveillaud, Joseph H Vineis

ISME J· March 2015

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Sewage reflects the microbiomes of human populations.
Ryan J Newton, Sandra L McLellan, Deborah K Dila, Joseph H Vineis, Hilary G Morrison

mBio· February 2015

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A single genus in the gut microbiome reflects host preference and specificity.
A Murat Eren, Mitchell L Sogin, Hilary G Morrison, Joseph H Vineis, Jenny C Fisher

ISME J· January 2015

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A filtering method to generate high quality short reads using illumina paired-end technology.
A Murat Eren, Joseph H Vineis, Hilary G Morrison, Mitchell L Sogin

PLoS One· March 2014

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Comparison of brush and biopsy sampling methods of the ileal pouch for assessment of mucosa-associated microbiota of human subjects.
Susan M Huse, Vincent B Young, Hilary G Morrison, Dionysios A Antonopoulos, John Kwon, Joseph H Vineis

Microbiome· February 2014

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Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis.
Vincent B Young, Laura H Raffals, Susan M Huse, Marius Vital, Dongjuan Dai, Joseph H Vineis

Microbiome· March 2013

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Detection of broadly distributed sodium channel alleles characteristic of insect pyrethroid resistance in West Nile virus vector Culex pipiens complex mosquitoes in the United States.
Ling Zhou, Gena G Lawrence, Joseph H Vineis, Janet C McAllister, Robert A Wirtz

J Med Entomol· March 2009

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Microsatellite data suggest significant population structure and differentiation within the malaria vector Anopheles darlingi in Central and South America.
Lisa Mirabello, Joseph H Vineis, Stephen P Yanoviak, Vera M Scarpassa, Marinete M Póvoa

BMC Ecol· March 2008

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Population structure of the malaria vector Anopheles darlingi in a malaria-endemic region of eastern Amazonian Brazil.
Jan E Conn, Joseph H Vineis, Jonathan P Bollback, David Y Onyabe, Richard C Wilkerson

Am J Trop Med Hyg· May 2006

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