Publications by authors named "Joseph Wade"

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Translational coupling of neighboring genes in prokaryotes.
Kerry M Brown, Joseph T Wade

J Bacteriol· October 2025

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Phase separation of mycobacterial Rho factor is associated with acid stress.
Sofia M Moreira, Joseph T Wade, Chris M Brown

bioRxiv· August 2025

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Integration of BrfS into the biofilm-controlling cascade promotes sessile growth at low temperatures.
Gonzalo Tulin, Andrea A E Méndez, Nicolás R Figueroa, Carol Smith, María P Folmer, Joseph T Wade

Biofilm· June 2025

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Predictive biophysical neural network modeling of a compendium of in vivo transcription factor DNA binding profiles for Escherichia coli.
Patrick Lally, Laura Gómez-Romero, Víctor H Tierrafría, Patricia Aquino, Claire Rioualen, Joseph T Wade

Nat Commun· May 2025

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A bacterial regulatory uORF senses multiple classes of ribosome-targeting antibiotics.
Gabriele Baniulyte, Joseph T Wade

Elife· May 2025

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Diversification of the Rho transcription termination factor in bacteria.
Sofia M Moreira, Te-Yuan Chyou, Joseph T Wade, Chris M Brown

Nucleic Acids Res· August 2024

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Mapping the DnaA-binding landscape reveals a preference for binding pairs of closely spaced DNA sites.
Anne M Stringer, Devon M Fitzgerald, Joseph T Wade

Microbiology (Reading)· July 2024

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Predictive Biophysical Neural Network Modeling of a Compendium of Transcription Factor DNA Binding Profiles for .
Patrick Lally, Laura Gómez-Romero, Víctor H Tierrafría, Patricia Aquino, Claire Rioualen, Joseph T Wade

bioRxiv· May 2024

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Direct and indirect control of Rho-dependent transcription termination by the riboswitch.
Tithi Ghosh, Shirin Jahangirnejad, Adrien Chauvier, Anne M Stringer, Alexey P Korepanov, Joseph T Wade

RNA· March 2024

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Promoter selectivity of the RhlR quorum-sensing transcription factor receptor in Pseudomonas aeruginosa is coordinated by distinct and overlapping dependencies on C4-homoserine lactone and PqsE.
Nicholas R Keegan, Nathalie J Colón Torres, Anne M Stringer, Lia I Prager, Matthew W Brockley, Joseph T Wade

PLoS Genet· December 2023

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Genome-Wide Mapping of the Escherichia coli PhoB Regulon Reveals Many Transcriptionally Inert, Intragenic Binding Sites.
Devon M Fitzgerald, Anne M Stringer, Carol Smith, Pascal Lapierre, Joseph T Wade

mBio· June 2023

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Mapping direct and indirect MarA/SoxS/Rob/RamA regulons in Typhimurium reveals repression of and biofilm formation.
Alistair D Middlemiss, James R J Haycocks, Anne M Stringer, Laura J V Piddock, Joseph T Wade

Microbiology (Reading)· May 2023

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The small mycobacterial ribosomal protein, bS22, modulates aminoglycoside accessibility to its 16S rRNA helix-44 binding site.
Soneya Majumdar, Ayush Deep, Manjuli R Sharma, Jill Canestrari, Melissa Stone, Joseph T Wade

bioRxiv· April 2023

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Genome-wide mapping of the PhoB regulon reveals many transcriptionally inert, intragenic binding sites.
Devon Fitzgerald, Anne Stringer, Carol Smith, Pascal Lapierre, Joseph T Wade

bioRxiv· February 2023

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Transcription-Translation Coupling in Bacteria.
Gregor M Blaha, Joseph T Wade

Annu Rev Genet· November 2022

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ASHP Guidelines on the Safe Use of Automated Compounding Devices for the Preparation of Parenteral Nutrition Admixtures.
Benjamin Iredell, Hesham Mourad, Nancy A Nickman, Hao Dieu, Gary Austin, Joseph Scott Wade

Am J Health Syst Pharm· May 2022

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RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in K-12.
Víctor H Tierrafría, Claire Rioualen, Heladia Salgado, Paloma Lara, Socorro Gama-Castro, Joseph T Wade

Microb Genom· May 2022

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Pervasive translation in .
Carol Smith, Jill G Canestrari, Archer J Wang, Matthew M Champion, Keith M Derbyshire, Joseph T Wade

Elife· March 2022

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A Practical Guide to Small Protein Discovery and Characterization Using Mass Spectrometry.
Christian H Ahrens, Joseph T Wade, Matthew M Champion, Julian D Langer

J Bacteriol· January 2022

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Spatiotemporal localization of proteins in mycobacteria.
Junhao Zhu, Ian D Wolf, Charles L Dulberger, Harim I Won, Jemila C Kester, Joseph T Wade

Cell Rep· December 2021

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Fluorescence Imaging-Based Discovery of Membrane Domain-Associated Proteins in .
Corelle A Z Rokicki, James R Brenner, Alexander H Dills, Julius J Judd, Jemila C Kester, Joseph T Wade

J Bacteriol· October 2021

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Dissecting Locus Regulation in Yersinia pestis.
Peng Li, Xiuran Wang, Carol Smith, Yixin Shi, Joseph T Wade

J Bacteriol· September 2021

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Widespread divergent transcription from bacterial and archaeal promoters is a consequence of DNA-sequence symmetry.
Emily A Warman, David Forrest, Thomas Guest, James J R J Haycocks, Joseph T Wade

Nat Microbiol· June 2021

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Correction: Regulatory roles of 5' UTR and ORF-internal RNAs detected by 3' end mapping.
Gisela Storz, Philip P Adams, Gabriele Baniulyte, Caroline Esnault, Kavya Chegireddy, Joseph T Wade

Elife· April 2021

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Identification of novel translated small ORFs in using complementary ribosome profiling approaches.
Anne Stringer, Carol Smith, Kyle Mangano, Joseph T Wade

J Bacteriol· January 2021

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