Publications by authors named "Pascal Lapierre"

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Whole genome sequencing of neurotoxin-producing species in New York state to bolster epidemiological investigations and reveal patterns of diversity and distribution.
Alexander J Diaz, Dominick A Centurioni, Erica Lasek-Nesselquist, Pascal Lapierre, Christina T Egan

Front Public Health· December 2025

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A novel hybridization capture method for direct whole genome sequencing of clinical specimens to inform Legionnaires' disease investigations.
Phillip Weeber, Navjot Singh, Pascal Lapierre, Lisa Mingle, Danielle Wroblewski

J Clin Microbiol· April 2024

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Mycobacterium tuberculosis complex whole-genome sequencing in New York State: Implementation of a reduced phenotypic drug susceptibility testing algorithm.
Joseph Shea, Tanya A Halse, Herns Modestil, Cheryl Kearns, Randal C Fowler, Pascal Lapierre

Tuberculosis (Edinb)· September 2023

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Whole genome sequencing of human Borrelia burgdorferi isolates reveals linked blocks of accessory genome elements located on plasmids and associated with human dissemination.
Jacob E Lemieux, Weihua Huang, Nathan Hill, Tjasa Cerar, Lisa Freimark, Pascal Lapierre

PLoS Pathog· August 2023

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Direct detection of drug-resistant using targeted next generation sequencing.
Shannon G Murphy, Carol Smith, Pascal Lapierre, Joseph Shea, Kruthikaben Patel

Front Public Health· July 2023

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Genome-Wide Mapping of the Escherichia coli PhoB Regulon Reveals Many Transcriptionally Inert, Intragenic Binding Sites.
Devon M Fitzgerald, Anne M Stringer, Carol Smith, Pascal Lapierre, Joseph T Wade

mBio· June 2023

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Genome-wide mapping of the PhoB regulon reveals many transcriptionally inert, intragenic binding sites.
Devon Fitzgerald, Anne Stringer, Carol Smith, Pascal Lapierre, Joseph T Wade

bioRxiv· February 2023

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Whole genome sequencing of isolates reveals linked clusters of plasmid-borne accessory genome elements associated with virulence.
Jacob E Lemieux, Weihua Huang, Nathan Hill, Tjasa Cerar, Lisa Freimark, Pascal Lapierre

bioRxiv· February 2023

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Comparative analysis of multiplexed PCR and short- and long-read whole genome sequencing to investigate a large Klebsiella pneumoniae outbreak in New York State.
Catharine Prussing, Karen Southwick, Emily Snavely, Anna Kidney, Linnell Randall, Pascal Lapierre

Diagn Microbiol Infect Dis· October 2022

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Type 2 autoimmune hepatitis: Genetic susceptibility.
Pascal Lapierre, Fernando Alvarez

Front Immunol· October 2022

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Characterization of sp. nov.: A novel nontuberculous mycobacteria isolated from a human wound infection.
Emily Musser, Carol Smith, Tanya A Halse, Donna Kohlerschmidt, Amy Rourke, Pascal Lapierre

Front Microbiol· October 2022

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Novel Mycobacterium tuberculosis Complex Genotype Related to M. caprae.
Joseph Shea, Carol Smith, Tanya A Halse, Donna Kohlerschmidt, Amy K Rourke, Pascal Lapierre

Emerg Infect Dis· July 2022

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Immune-Mediated Hepatitis During Immune Checkpoint Inhibitor cancer Immunotherapy: Lessons From Autoimmune Hepatitis and Liver Immunology.
Julian Hercun, Catherine Vincent, Marc Bilodeau, Pascal Lapierre

Front Immunol· July 2022

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Improvements to the Success of Outbreak Investigations of Legionnaires' Disease: 40 Years of Testing and Investigation in New York State.
Dianna Schoonmaker-Bopp, Elizabeth Nazarian, David Dziewulski, Ernest Clement, Deborah J Baker, Pascal Lapierre

Appl Environ Microbiol· July 2021

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RNA-Seq analysis of blood meal induced gene-expression changes in Aedes aegypti ovaries.
Dilip K Nag, Constentin Dieme, Pascal Lapierre, Erica Lasek-Nesselquist, Laura D Kramer

BMC Genomics· May 2021

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Low-Level Rifampin Resistance and Mutations in Mycobacterium tuberculosis: an Analysis of Whole-Genome Sequencing and Drug Susceptibility Test Data in New York.
Joseph Shea, Tanya A Halse, Donna Kohlerschmidt, Pascal Lapierre, Herns A Modestil

J Clin Microbiol· March 2021

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A Bioinformatic Pipeline for Improved Genome Analysis and Clustering of Isolates during Outbreaks of Legionnaires' Disease.
Wolfgang Haas, Pascal Lapierre, Kimberlee A Musser

J Clin Microbiol· January 2021

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Assessing Nanopore Sequencing for Clinical Diagnostics: a Comparison of Next-Generation Sequencing (NGS) Methods for Mycobacterium tuberculosis.
Carol Smith, Tanya A Halse, Joseph Shea, Herns Modestil, Randal C Fowler, Pascal Lapierre

J Clin Microbiol· December 2020

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Nanopore MinION Sequencing Reveals Possible Transfer of Plasmid Across Bacterial Species in Two Healthcare Facilities.
Catharine Prussing, Emily A Snavely, Navjot Singh, Pascal Lapierre, Erica Lasek-Nesselquist

Front Microbiol· August 2020

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Origin of 3 Rabid Terrestrial Animals in Raccoon Rabies Virus-Free Zone, Long Island, New York, USA, 2016-2017.
Scott Brunt, Heather Solomon, Hilaire Leavitt, Erica Lasek-Nesselquist, Pascal LaPierre

Emerg Infect Dis· June 2020

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Whole-Genome Single-Nucleotide Polymorphism (SNP) Analysis Applied Directly to Stool for Genotyping Shiga Toxin-Producing Escherichia coli: an Advanced Molecular Detection Method for Foodborne Disease Surveillance and Outbreak Tracking.
Navjot Singh, Pascal Lapierre, Tammy M Quinlan, Tanya A Halse, Samantha Wirth

J Clin Microbiol· July 2019

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Oxaloacetate Protects Rat Liver From Experimental Warm Ischemia/Reperfusion Injury by Improving Cellular Energy Metabolism.
Grégory Merlen, Valérie-Ann Raymond, Shamir Cassim, Pascal Lapierre, Marc Bilodeau

Liver Transpl· April 2019

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Upregulation of Krebs cycle and anaerobic glycolysis activity early after onset of liver ischemia.
Tom S Chan, Shamir Cassim, Valérie-Ann Raymond, Sven Gottschalk, Grégory Merlen, Pascal Lapierre

PLoS One· December 2018

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Insights into the long-term persistence of Legionella in facilities from whole-genome sequencing.
Megan Wells, Erica Lasek-Nesselquist, Dianna Schoonmaker-Bopp, Deborah Baker, Lisa Thompson, Pascal Lapierre

Infect Genet Evol· November 2018

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Metabolite profiling identifies a signature of tumorigenicity in hepatocellular carcinoma.
Shamir Cassim, Valérie-Ann Raymond, Benoit Lacoste, Pascal Lapierre, Marc Bilodeau

Oncotarget· June 2018

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