Publications by authors named "Joseph Shea"

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Mycobacterium tuberculosis complex whole-genome sequencing in New York State: Implementation of a reduced phenotypic drug susceptibility testing algorithm.
Joseph Shea, Tanya A Halse, Herns Modestil, Cheryl Kearns, Randal C Fowler

Tuberculosis (Edinb)· September 2023

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Direct detection of drug-resistant using targeted next generation sequencing.
Shannon G Murphy, Carol Smith, Pascal Lapierre, Joseph Shea, Kruthikaben Patel

Front Public Health· July 2023

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Novel Mycobacterium tuberculosis Complex Genotype Related to M. caprae.
Joseph Shea, Carol Smith, Tanya A Halse, Donna Kohlerschmidt, Amy K Rourke

Emerg Infect Dis· July 2022

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Glaciohydrology of the Himalaya-Karakoram.
Mohd Farooq Azam, Jeffrey S Kargel, Joseph M Shea, Santosh Nepal, Umesh K Haritashya

Science· August 2021

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Multi-year observations of the high mountain water cycle in the Langtang catchment, Central Himalaya.
Jakob F Steiner, Tika R Gurung, Sharad P Joshi, Inka Koch, Tuomo Saloranta, Joseph Shea

Hydrol Process· May 2021

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Low-Level Rifampin Resistance and Mutations in Mycobacterium tuberculosis: an Analysis of Whole-Genome Sequencing and Drug Susceptibility Test Data in New York.
Joseph Shea, Tanya A Halse, Donna Kohlerschmidt, Pascal Lapierre, Herns A Modestil

J Clin Microbiol· March 2021

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Assessing Nanopore Sequencing for Clinical Diagnostics: a Comparison of Next-Generation Sequencing (NGS) Methods for Mycobacterium tuberculosis.
Carol Smith, Tanya A Halse, Joseph Shea, Herns Modestil, Randal C Fowler

J Clin Microbiol· December 2020

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Glacier ablation and temperature indexed melt models in the Nepalese Himalaya.
Maxime Litt, Joseph Shea, Patrick Wagnon, Jakob Steiner, Inka Koch

Sci Rep· March 2019

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Five-year performance monitoring of a high-density polyethylene (HDPE) cover system at a reclaimed mine waste rock pile in the Sydney Coalfield (Nova Scotia, Canada).
Christopher Power, Murugan Ramasamy, Devin MacAskill, Joseph Shea, Joseph MacPhee

Environ Sci Pollut Res Int· December 2017

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Mycobacterium orygis Lymphadenitis in New York, USA.
Luis A Marcos, Eric D Spitzer, Rahul Mahapatra, Yupo Ma, Tanya A Halse, Joseph Shea

Emerg Infect Dis· October 2017

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Comprehensive Whole-Genome Sequencing and Reporting of Drug Resistance Profiles on Clinical Cases of Mycobacterium tuberculosis in New York State.
Joseph Shea, Tanya A Halse, Pascal Lapierre, Matthew Shudt, Donna Kohlerschmidt

J Clin Microbiol· June 2017

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Draft Genome Sequence of Branchiibius sp. NY16-3462-2, Isolated from a Mixed Clinical Sample.
Pascal Lapierre, Tanya A Halse, Joseph Shea, Vincent E Escuyer, Kimberlee A Musser

Genome Announc· May 2016

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