Publications by authors named "Matthew Shudt"

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Implementation of a high-throughput whole genome sequencing approach with the goal of maximizing efficiency and cost effectiveness to improve public health.
Michelle C Dickinson, Samantha E Wirth, Deborah Baker, Anna M Kidney, Kara K Mitchell, Matthew Shudt

Microbiol Spectr· April 2024

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Combining genomic and epidemiological data to compare the transmissibility of SARS-CoV-2 variants Alpha and Iota.
Mary E Petrone, Jessica E Rothman, Mallery I Breban, Isabel M Ott, Alexis Russell, Matthew Shudt

Commun Biol· May 2022

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Combining genomic and epidemiological data to compare the transmissibility of SARS-CoV-2 lineages.
Mary E Petrone, Jessica E Rothman, Mallery I Breban, Isabel M Ott, Alexis Russell, Matthew Shudt

medRxiv· July 2021

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Early introductions and transmission of SARS-CoV-2 variant B.1.1.7 in the United States.
Tara Alpert, Anderson F Brito, Erica Lasek-Nesselquist, Jessica Rothman, Andrew L Valesano, Matthew Shudt

Cell· May 2021

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Early introductions and community transmission of SARS-CoV-2 variant B.1.1.7 in the United States.
Tara Alpert, Anderson F Brito, Erica Lasek-Nesselquist, Jessica Rothman, Andrew L Valesano, Matthew Shudt

medRxiv· March 2021

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Molecular typing and whole genome next generation sequencing of human adenovirus 8 strains recovered from four 2012 outbreaks of keratoconjunctivitis in New York State.
Daryl M Lamson Bs, Adriana E Kajon, Matthew Shudt, Monica Quinn, Alexandra Newman

J Med Virol· September 2018

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Oseltamivir-zanamivir combination therapy suppresses drug-resistant H1N1 influenza A viruses in the hollow fiber infection model (HFIM) system.
Camilly P Pires de Mello, George L Drusano, Jonathan R Adams, Matthew Shudt, Robert Kulawy

Eur J Pharm Sci· January 2018

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Corrigendum to "Next generation sequencing for whole genome analysis and surveillance of influenza A viruses" [J. Clin. Virol. 79 (2016) 44-50].
Jana McGinnis, Jennifer Laplante, Matthew Shudt, Kirsten St George

J Clin Virol· August 2017

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Detection and Genetic Characterization of Adenovirus Type 14 Strain in Students with Influenza-Like Illness, New York, USA, 2014-2015.
Daryl M Lamson, Adriana Kajon, Matthew Shudt, Gabriel Girouard, Kirsten St George

Emerg Infect Dis· July 2017

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Comprehensive Whole-Genome Sequencing and Reporting of Drug Resistance Profiles on Clinical Cases of Mycobacterium tuberculosis in New York State.
Joseph Shea, Tanya A Halse, Pascal Lapierre, Matthew Shudt, Donna Kohlerschmidt

J Clin Microbiol· June 2017

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Next generation sequencing for whole genome analysis and surveillance of influenza A viruses.
Jana McGinnis, Jennifer Laplante, Matthew Shudt, Kirsten St George

J Clin Virol· June 2016

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Identification of a novel intertypic recombinant species D human adenovirus in a pediatric stem cell transplant recipient.
Adriana E Kajon, Daryl Lamson, Matthew Shudt, Zacharoula Oikonomopoulou, Brian Fisher

J Clin Virol· December 2014

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Rapid whole-genome sequencing for surveillance of Salmonella enterica serovar enteritidis.
Henk C den Bakker, Marc W Allard, Dianna Bopp, Eric W Brown, John Fontana, Matthew Shudt

Emerg Infect Dis· August 2014

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Influenza antiviral resistance testing in new york and wisconsin, 2006 to 2008: methodology and surveillance data.
Jennifer M Laplante, Steven A Marshall, Matthew Shudt, Tam T Van, Erik S Reisdorf

J Clin Microbiol· May 2009

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