Publications by authors named "Josh D Neufeld"

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Low water activity limits bentonite-associated microbial growth.
Rhiannon Punch, Lucas Beckering Vinckers Stofer, C M James Neurauter, Rachel C Beaver, Katja Engel, Josh D Neufeld

J Appl Microbiol· October 2025

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Effect of temperature on microbial communities in bentonite for use in engineered barrier systems.
Rachel C Beaver, Cailyn M Perry, Chang Seok Kim, Josh D Neufeld

mSphere· September 2025

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Interface-associated microbial growth in anoxic pressure vessels containing compacted gapfill bentonite.
Rachel C Beaver, Claire S Tully, W Jeffrey Binns, James J Noël, Josh D Neufeld

J Appl Microbiol· July 2025

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Comparative proteomics of biofilm development in discovers a distinct family of Ca-dependent adhesins.
Sura Ali, Alexander Stavropoulos, Benjamin Jenkins, Sadie Graves, Atiyeh Ahmadi, Josh D Neufeld

mBio· June 2025

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Characterizing biofilm thickness, density, and microbial community composition in a full-scale hybrid membrane aerated biofilm reactor.
Narasimman Lakshminarasimman, Michelle M McKnight, Josh D Neufeld, Wayne Parker

Bioresour Technol· May 2025

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Minimal changes in microbial abundances and diversity over 7 years of emplacement for modules of compacted bentonite exposed to natural groundwater.
Harmanpreet S Sidhu, Katja Engel, Sian E Ford, Peter Keech, Mehran Behazin, Josh D Neufeld

Appl Environ Microbiol· March 2025

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Validating digital polymerase chain reaction for 16S rRNA gene amplification from low biomass environmental samples.
Veronika V Koziaeva, Katja Engel, Josh D Neufeld

ISME Commun· January 2025

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Microbial community succession of home aquarium biofilters associated with early establishment of comammox .
Michelle M McKnight, Natasha Szabolcs, Alyssa Graham, Josh D Neufeld

ISME Commun· January 2025

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Deep terrestrial indigenous microbial community dominated by Frackibacter.
Sian E Ford, Greg F Slater, Katja Engel, Oliver Warr, Garnet S Lollar, Josh D Neufeld

Commun Earth Environ· December 2024

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Microbial communities change along the 300 km length of the Grand River for extreme high- and low-flow regimes.
Taylor L Virgin, Prinpida Sonthiphand, Sara Coyotzi, Michael W Hall, Jason J Venkiteswaran, Josh D Neufeld

Can J Microbiol· July 2024

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Comammox among dominant ammonia oxidizers within aquarium biofilter microbial communities.
Michelle M McKnight, Josh D Neufeld

Appl Environ Microbiol· July 2024

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Impact of dry density and incomplete saturation on microbial growth in bentonite clay for nuclear waste storage.
Rachel C Beaver, Melody A Vachon, Claire S Tully, Katja Engel, Emilie Spasov, Josh D Neufeld

J Appl Microbiol· March 2024

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AnnoView enables large-scale analysis, comparison, and visualization of microbial gene neighborhoods.
Xin Wei, Huagang Tan, Briallen Lobb, William Zhen, Zijing Wu, Josh D Neufeld

Brief Bioinform· March 2024

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Enigmatic persistence of aerobic methanotrophs in oxygen-limiting freshwater habitats.
Paula C J Reis, Jackson M Tsuji, Cerrise Weiblen, Sherry L Schiff, Matthew Scott, Josh D Neufeld

ISME J· January 2024

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Evaluation of multiple displacement amplification for metagenomic analysis of low biomass samples.
Melody Cabrera Ospino, Katja Engel, Santiago Ruiz-Navas, W Jeffrey Binns, Andrew C Doxey, Josh D Neufeld

ISME Commun· January 2024

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Microbial ecology of the deep terrestrial subsurface.
Rachel C Beaver, Josh D Neufeld

ISME J· January 2024

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Nonparametric richness estimators Chao1 and ACE must not be used with amplicon sequence variant data.
Yongcui Deng, Alexander K Umbach, Josh D Neufeld

ISME J· January 2024

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Stable microbial community in compacted bentonite after 5 years of exposure to natural granitic groundwater.
Katja Engel, Sian E Ford, W Jeffrey Binns, Nikitas Diomidis, Greg F Slater, Josh D Neufeld

mSphere· October 2023

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Evaluating cpn60 for high-resolution profiling of the mammalian skin microbiome and detection of phylosymbiosis.
Alexander K Umbach, Champika Fernando, Janet E Hill, Josh D Neufeld

ISME Commun· July 2023

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Microbes 'R' us.
Josh D Neufeld

Environ Microbiol· January 2023

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Simultaneous nitrification, denitrification, and phosphorus removal from municipal wastewater at low temperature.
Xuanye Bai, Michelle M McKnight, Josh D Neufeld, Wayne J Parker

Bioresour Technol· January 2023

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DNA-, RNA-, and Protein-Based Stable-Isotope Probing for High-Throughput Biomarker Analysis of Active Microorganisms.
Eleanor Jameson, Martin Taubert, Roey Angel, Sara Coyotzi, Yin Chen, Josh D Neufeld

Methods Mol Biol· November 2022

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Large Fractionation in Iron Isotopes Implicates Metabolic Pathways for Iron Cycling in Boreal Shield Lakes.
Kai Liu, Sherry L Schiff, Lingling Wu, Lewis A Molot, Jason J Venkiteswaran, Josh D Neufeld

Environ Sci Technol· October 2022

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Nitrogen removal pathways during simultaneous nitrification, denitrification, and phosphorus removal under low temperature and dissolved oxygen conditions.
Xuanye Bai, Michelle M McKnight, Josh D Neufeld, Wayne J Parker

Bioresour Technol· June 2022

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Ammonia-oxidizing archaea and complete ammonia-oxidizing in water treatment systems.
Sarah Al-Ajeel, Emilie Spasov, Laura A Sauder, Michelle M McKnight, Josh D Neufeld

Water Res X· May 2022

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