Publications by authors named "Joshua B Singer"

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The evolutionary dynamics and epidemiological history of hepatitis C virus genotype 6, including unique strains from the Li community of Hainan Island, China.
Ru Xu, Elihu Aranday-Cortes, E Carol McWilliam Leitch, Joseph Hughes, Joshua B Singer

Virus Evol· February 2022

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Real world SOF/VEL/VOX retreatment outcomes and viral resistance analysis for HCV patients with prior failure to DAA therapy.
David A Smith, Daniel Bradshaw, Jean L Mbisa, Carmen F Manso, David F Bibby, Joshua B Singer

J Viral Hepat· September 2021

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Rapid feedback on hospital onset SARS-CoV-2 infections combining epidemiological and sequencing data.
Oliver Stirrup, Joseph Hughes, Matthew Parker, David G Partridge, James G Shepherd, Joshua B Singer

Elife· June 2021

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Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.
Franziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida, Abdel Aouacheria, Cecilia Arighi, Joshua B Singer

Brief Bioinform· March 2021

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Author Correction: Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland.
Ana da Silva Filipe, James G Shepherd, Thomas Williams, Joseph Hughes, Elihu Aranday-Cortes, Joshua B Singer

Nat Microbiol· March 2021

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Natural selection in the evolution of SARS-CoV-2 in bats created a generalist virus and highly capable human pathogen.
Oscar A MacLean, Spyros Lytras, Steven Weaver, Joshua B Singer, Maciej F Boni

PLoS Biol· March 2021

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Publisher Correction: Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland.
Ana da Silva Filipe, James G Shepherd, Thomas Williams, Joseph Hughes, Elihu Aranday-Cortes, Joshua B Singer

Nat Microbiol· February 2021

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Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland.
Ana da Silva Filipe, James G Shepherd, Thomas Williams, Joseph Hughes, Elihu Aranday-Cortes, Joshua B Singer

Nat Microbiol· January 2021

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Evidence of tenofovir resistance in chronic hepatitis B virus (HBV) infection: An observational case series of South African adults.
Jolynne Mokaya, Tongai G Maponga, Anna L McNaughton, Marije Van Schalkwyk, Susan Hugo, Joshua B Singer

J Clin Virol· August 2020

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Natural selection in the evolution of SARS-CoV-2 in bats, not humans, created a highly capable human pathogen.
Oscar A MacLean, Spyros Lytras, Steven Weaver, Joshua B Singer, Maciej F Boni

bioRxiv· July 2020

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Rapid in-country sequencing of whole virus genomes to inform rabies elimination programmes.
Kirstyn Brunker, Gurdeep Jaswant, S M Thumbi, Kennedy Lushasi, Ahmed Lugelo, Joshua B Singer

Wellcome Open Res· May 2020

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"Frozen evolution" of an RNA virus suggests accidental release as a potential cause of arbovirus re-emergence.
David J Pascall, Kyriaki Nomikou, Emmanuel Bréard, Stephan Zientara, Ana da Silva Filipe, Joshua B Singer

PLoS Biol· April 2020

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No evidence for distinct types in the evolution of SARS-CoV-2.
Oscar A MacLean, Richard J Orton, Joshua B Singer, David L Robertson

Virus Evol· January 2020

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Convalescent plasma therapy for persistent hepatitis E virus infection.
Michael Ankcorn, Jennifer Gallacher, Samreen Ijaz, Yusri Taha, Heli Harvala, Joshua B Singer

J Hepatol· August 2019

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Highly Diverse Hepatitis C Strains Detected in Sub-Saharan Africa Have Unknown Susceptibility to Direct-Acting Antiviral Treatments.
Chris Davis, George S Mgomella, Ana da Silva Filipe, Eric H Frost, Genevieve Giroux, Joshua B Singer

Hepatology· April 2019

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Interpreting Viral Deep Sequencing Data with GLUE.
Joshua B Singer, Emma C Thomson, Joseph Hughes, Elihu Aranday-Cortes, John McLauchlan

Viruses· April 2019

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The evolution, distribution and diversity of endogenous circoviral elements in vertebrate genomes.
Tristan P W Dennis, William Marciel de Souza, Soledad Marsile-Medun, Joshua B Singer, Sam J Wilson

Virus Res· March 2019

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GLUE: a flexible software system for virus sequence data.
Joshua B Singer, Emma C Thomson, John McLauchlan, Joseph Hughes, Robert J Gifford

BMC Bioinformatics· December 2018

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Insights into Circovirus Host Range from the Genomic Fossil Record.
Tristan P W Dennis, Peter J Flynn, William Marciel de Souza, Joshua B Singer, Corrie S Moreau

J Virol· August 2018

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Predicting the Effectiveness of Hepatitis C Virus Neutralizing Antibodies by Bioinformatic Analysis of Conserved Epitope Residues Using Public Sequence Data.
Vanessa M Cowton, Joshua B Singer, Robert J Gifford, Arvind H Patel

Front Immunol· June 2018

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Fundamental properties of the mammalian innate immune system revealed by multispecies comparison of type I interferon responses.
Andrew E Shaw, Joseph Hughes, Quan Gu, Abdelkader Behdenna, Joshua B Singer

PLoS Biol· December 2017

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Hepatitis C and the absence of genomic data in low-income countries: a barrier on the road to elimination?
Marc Niebel, Joshua B Singer, Sema Nickbakhsh, Robert J Gifford, Emma C Thomson

Lancet Gastroenterol Hepatol· October 2017

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