Publications by authors named "Joshua Gardner"

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Complete genomes of a multi-generational pedigree to expand studies of genetic and epigenetic inheritance.
Monika Cechova, Tamara A Potapova, Andreas Rechtsteiner, Glenn Hickey, Rebecca Serra Mari, Joshua M V Gardner

bioRxiv· December 2025

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Phenotypic and functional characterisation of liver-infiltrating T-cells in a case of CFTR modulator induced drug-induced liver injury.
Elsie Clarke, Joshua Gardner, Alanood Howsawi, Lindsey Gillgrass, Jobst F Roehmel

J Cyst Fibros· November 2025

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Accurate somatic small variant discovery for multiple sequencing technologies with DeepSomatic.
Jimin Park, Daniel E Cook, Pi-Chuan Chang, Alexey Kolesnikov, Lucas Brambrink, Joshua Gardner

Nat Biotechnol· October 2025

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Elucidating CD4+ and CD8+ T-cell involvement in patients with vancomycin-induced DRESS.
Joshua Gardner, Silvia Martinez-Rivera, James Line, Paul Thomson, Elsie Clarke

Toxicol Sci· August 2025

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Correction: Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair.
Jennifer H McDaniel, Vaidehi Patel, Nathan D Olson, Hua-Jun He, Zhiyong He, Joshua Gardner

Sci Data· August 2025

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Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair.
Jennifer H McDaniel, Vaidehi Patel, Nathan D Olson, Hua-Jun He, Zhiyong He, Joshua Gardner

Sci Data· July 2025

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Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair.
Jennifer H McDaniel, Vaidehi Patel, Nathan D Olson, Hua-Jun He, Zhiyong He, Joshua Gardner

bioRxiv· June 2025

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TSC22 domain family member 3 links natural killer cells to CD8+ T cell-mediated drug hypersensitivity.
Lele Sun, Pengcheng Huai, Zhenzhen Wang, Qing Zhao, Yingjie Lin, Joshua Gardner

Signal Transduct Target Ther· June 2025

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Feedback regulation of VISTA and Treg by TNF-α controls T cell responses in drug allergy.
Lele Sun, Qing Zhao, Suiting Ao, Tingting Liu, Zhenzhen Wang, Joshua Gardner

Allergy· May 2025

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Immunogenic adverse events to CFTR modulators - An international survey.
Ruth M Urbantat, Laura Behan, Sebastian Wisniewski, Joshua Gardner, Mirjam Stahl

J Cyst Fibros· May 2025

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Severus detects somatic structural variation and complex rearrangements in cancer genomes using long-read sequencing.
Ayse G Keskus, Asher Bryant, Tanveer Ahmad, Byunggil Yoo, Sergey Aganezov, Joshua Gardner

Nat Biotechnol· April 2025

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Advancing long-read nanopore genome assembly and accurate variant calling for rare disease detection.
Shloka Negi, Sarah L Stenton, Seth I Berger, Paolo Canigiula, Brandy McNulty, Joshua Gardner

Am J Hum Genet· February 2025

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Advancing long-read nanopore genome assembly and accurate variant calling for rare disease detection.
Shloka Negi, Sarah L Stenton, Seth I Berger, Brandy McNulty, Ivo Violich, Joshua Gardner

medRxiv· August 2024

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DeepSomatic: Accurate somatic small variant discovery for multiple sequencing technologies.
Jimin Park, Daniel E Cook, Pi-Chuan Chang, Alexey Kolesnikov, Lucas Brambrink, Joshua Gardner

bioRxiv· August 2024

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Identification of cross reactive T cell responses in adenovirus based COVID 19 vaccines.
Joshua Gardner, Simon Timothy Abrams, Cheng-Hock Toh, Alan L Parker, Charlotte Lovatt

NPJ Vaccines· June 2024

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Igniting children's enthusiasm for microbes with an origami paper microscope.
Joshua Gardner, Cynthia Perry, Jorge Cervantes

J Microbiol Biol Educ· April 2024

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Antimicrobial effect of chamomile-containing over-the-counter ear and eye drops.
Soroush Farsi, Shahrukh Chaudhry, Ahmed Khan, Joshua Gardner, Morgan Ogwo

J Investig Med· March 2024

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Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long reads.
Ayse Keskus, Asher Bryant, Tanveer Ahmad, Byunggil Yoo, Sergey Aganezov, Joshua Gardner

medRxiv· March 2024

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Glycolysis: An early marker for vancomycin-specific T-cell activation.
Joshua Gardner, Sean Hammond, Rebecca Jensen, Andrew Gibson, Matthew S Krantz

Clin Exp Allergy· January 2024

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A blinded in vitro analysis of the intrinsic immunogenicity of hepatotoxic drugs: implications for preclinical risk assessment.
Monday O Ogese, Adam Lister, Liam Farrell, Joshua Gardner, Laila Kafu

Toxicol Sci· December 2023

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Low-Dose Alteplase versus Conventional Anticoagulation to treat Submassive Pulmonary Embolism in Hispanic Patients.
Emily Zientek, Kelsey Talkington, Joshua Gardner, Yi Guo, Debabrata Mukherjee

Int J Angiol· June 2023

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Activation of Human CD8+ T Cells with Nitroso Dapsone-Modified HLA-B*13:01-Binding Peptides.
Mubarak Almutairi, Adam Lister, Qing Zhao, James Line, Kareena Adair, Joshua Gardner

J Immunol· April 2023

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Checkpoint Inhibition Reduces the Threshold for Drug-Specific T-Cell Priming and Increases the Incidence of Sulfasalazine Hypersensitivity.
Sean Hammond, Anna Olsson-Brown, Sophie Grice, Andrew Gibson, Joshua Gardner

Toxicol Sci· February 2022

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Characterization of Teicoplanin-Specific T-Cells from Drug Naïve Donors Expressing HLA-A*32:01.
Joshua Gardner, Monday Ogese, Catherine J Betts, Munir Pirmohamed, Dean J Naisbitt

Chem Res Toxicol· February 2022

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