Publications by authors named "Joshua M Mitchell"

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Constructing a consensus serum metabolome.
Yuanye Chi, Joshua M Mitchell, Maheshwor Thapa, Shujian Zheng, Zackary Frohock

bioRxiv· May 2025

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Systematic pre-annotation explains the "dark matter" in LC-MS metabolomics.
Yuanye Chi, Joshua M Mitchell, Shujian Zheng, Shuzhao Li

bioRxiv· March 2025

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Annotation of Metabolites in Stable Isotope Tracing Untargeted Metabolomics via Khipu-web.
Joshua M Mitchell, Yuanye Chi, Shujian Zheng, Maheshwor Thapa, Eric Wang

J Am Soc Mass Spectrom· December 2024

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In situ crystalline structure of the human eosinophil major basic protein-1.
Jie E Yang, Joshua M Mitchell, Craig A Bingman, Deane F Mosher, Elizabeth R Wright

bioRxiv· October 2024

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Common data models to streamline metabolomics processing and annotation, and implementation in a Python pipeline.
Joshua M Mitchell, Yuanye Chi, Maheshwor Thapa, Zhiqiang Pang, Jianguo Xia

PLoS Comput Biol· June 2024

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Common data models to streamline metabolomics processing and annotation, and implementation in a Python pipeline.
Joshua M Mitchell, Yuanye Chi, Maheshwor Thapa, Zhiqiang Pang, Jianguo Xia

bioRxiv· February 2024

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Iodide uptake by forest soils is principally related to the activity of extracellular oxidases.
Russell M Grandbois, Peter H Santschi, Chen Xu, Joshua M Mitchell, Daniel I Kaplan

Front Chem· March 2023

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Conformational flexibility in carbapenem hydrolysis drives substrate specificity of the class D carbapenemase OXA-24/40.
Joshua M Mitchell, Cynthia M June, Vincent L Baggett, Beth C Lowe, James F Ruble

J Biol Chem· July 2022

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Scan-Centric, Frequency-Based Method for Characterizing Peaks from Direct Injection Fourier Transform Mass Spectrometry Experiments.
Robert M Flight, Joshua M Mitchell, Hunter N B Moseley

Metabolites· June 2022

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Untargeted Lipidomics of Non-Small Cell Lung Carcinoma Demonstrates Differentially Abundant Lipid Classes in Cancer vs. Non-Cancer Tissue.
Joshua M Mitchell, Robert M Flight, Hunter N B Moseley

Metabolites· October 2021

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Atom Identifiers Generated by a Neighborhood-Specific Graph Coloring Method Enable Compound Harmonization across Metabolic Databases.
Huan Jin, Joshua M Mitchell, Hunter N B Moseley

Metabolites· September 2020

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Deriving Lipid Classification Based on Molecular Formulas.
Joshua M Mitchell, Robert M Flight, Hunter N B Moseley

Metabolites· March 2020

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Small Molecule Isotope Resolved Formula Enumeration: A Methodology for Assigning Isotopologues and Metabolite Formulas in Fourier Transform Mass Spectra.
Joshua M Mitchell, Robert M Flight, Hunter N B Moseley

Anal Chem· July 2019

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New methods to identify high peak density artifacts in Fourier transform mass spectra and to mitigate their effects on high-throughput metabolomic data analysis.
Joshua M Mitchell, Robert M Flight, Qing Jun Wang, Richard M Higashi, Teresa W-M Fan

Metabolomics· September 2018

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Exploring the potential of boronic acids as inhibitors of OXA-24/40 β-lactamase.
Josephine P Werner, Joshua M Mitchell, Magdalena A Taracila, Robert A Bonomo, Rachel A Powers

Protein Sci· March 2017

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Structural basis of activity against aztreonam and extended spectrum cephalosporins for two carbapenem-hydrolyzing class D β-lactamases from Acinetobacter baumannii.
Joshua M Mitchell, Jozlyn R Clasman, Cynthia M June, Kip-Chumba J Kaitany, James R LaFleur

Biochemistry· March 2015

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Common clinical substitutions enhance the carbapenemase activity of OXA-51-like class D β-lactamases from Acinetobacter spp.
Joshua M Mitchell, David A Leonard

Antimicrob Agents Chemother· November 2014

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Development and in silico evaluation of large-scale metabolite identification methods using functional group detection for metabolomics.
Joshua M Mitchell, Teresa W-M Fan, Andrew N Lane, Hunter N B Moseley

Front Genet· August 2014

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