Publications by authors named "Joshua Mell"

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Inflammatory microglia signals drive A1-like polarization of astrocytes even in the presence of HIV-1 Tat.
Jill M Lawrence, Will Dampier, Joshua Chang Mell, Diehl R De Souza, Kayla Schardien

Mol Neurobiol· December 2025

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A 5'-UTR cis-acting RNA element targeted by RNase III is essential for DNA simple sequence repeat-dependent phase variation in Haemophilus influenzae.
Beatriz Rapún-Araiz, Begoña Euba, Joshua C Mell, Alejandro Toledo-Arana, Junkal Garmendia

Nucleic Acids Res· November 2025

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Outer Membrane Vesicles From Contain Coding and Non-Coding Small RNA Species That Modulate Inflammatory Signalling in Intestinal Epithelial Cells.
Aadil Sheikh, Colin Scano, Julia Xu, Tolulope Ojo, Jessica M Conforti, Joshua Mell

J Extracell Biol· October 2025

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Epigenetic control of the ferric uptake regulator (Fur) and fumarate nitrate reductase (FNR) master regulatory proteins contributes to survival during lung infection.
Celia Gil-Campillo, Begoña Euba, Irene Rodríguez-Arce, David San León, Mary C Marino, Joshua C Mell

mBio· August 2025

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Influenza virus-induced type I interferons disrupt alveolar epithelial repair and tight junction integrity in the developing lung.
Abigail P Onufer, Joshua Chang Mell, Laura Cort, Abhishek Rao, Nontokozo V Mdluli

Mucosal Immunol· June 2025

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Characterization of the family-level pan-genome and development of an episomal typing protocol.
Kalya M Socarras, Mary C Marino, Joshua P Earl, Rachel L Ehrlich, Nicholas A Cramer, Joshua C Mell

mBio· June 2025

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Outer membrane vesicles from contain coding and non-coding small RNA species that modulate inflammatory signaling in intestinal epithelial cells.
Aadil Sheikh, Colin Scano, Julia Xu, Tolulope Ojo, Jessica M Conforti, Joshua Mell

bioRxiv· June 2025

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Metronidazole response profiles of Gardnerella species are congruent with phylogenetic and comparative genomic analyses.
Katherine A Innamorati, Joshua P Earl, Shirley C Barrera, Rachel L Ehrlich, Josephine Aiyeku, Joshua Chang Mell

Genome Med· March 2025

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Enhancing nucleotide sequence representations in genomic analysis with contrastive optimization.
Mohammadsaleh Refahi, Bahrad A Sokhansanj, Joshua C Mell, James R Brown, Hyunwoo Yoo

Commun Biol· March 2025

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A two-variant model of SARS-COV-2 transmission: estimating the characteristics of a newly emerging strain.
Teresa K Yamana, Swetha Rajagopal, Donald C Hall, Ahmed M Moustafa, Andries Feder, Joshua Chang Mell

BMC Infect Dis· September 2024

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Long-term Sudan Virus Ebola Survivors Maintain Multiple Antiviral Defense Mechanisms.
Ariel Sobarzo, Yves Moné, Steven Lang, Sigal Gelkop, Polina Brangel, Joshua Chang Mell

J Infect Dis· August 2024

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Characterization of the family-level Borreliaceae pan-genome and development of an episomal typing protocol.
Kayla M Socarras, Mary C Marino, Joshua P Earl, Rachel L Ehrlich, Nicholas A Cramer, Joshua C Mell

Res Sq· June 2024

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A long-read sequencing strategy with overlapping linkers on adjacent fragments (OLAF-Seq) for targeted resequencing and enrichment.
Lahari Uppuluri, Christina Huan Shi, Dharma Varapula, Eleanor Young, Rachel L Ehrlich, Joshua Chang Mell

Sci Rep· March 2024

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Phylogenomics of nontuberculous mycobacteria respiratory infections in people with cystic fibrosis.
Nicholas Bolden, Joshua Chang Mell, Jennifer Bouso Logan, Paul J Planet

Paediatr Respir Rev· June 2023

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Genetic Adaptation and Acquisition of Macrolide Resistance in Haemophilus spp. during Persistent Respiratory Tract Colonization in Chronic Obstructive Pulmonary Disease (COPD) Patients Receiving Long-Term Azithromycin Treatment.
Anna Carrera-Salinas, Aida González-Díaz, Rachel L Ehrlich, Dàmaris Berbel, Fe Tubau, Joshua Chang Mell

Microbiol Spectr· February 2023

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Mitochondrially targeted proximity biotinylation and proteomic analysis in Plasmodium falciparum.
Ian M Lamb, Kelly T Rios, Anurag Shukla, Avantika I Ahiya, Joanne Morrisey, Joshua C Mell

PLoS One· August 2022

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The methyltransferase enzymes KMT2D, SETD1B, and ASH1L are key mediators of both metabolic and epigenetic changes during cellular senescence.
Timothy Nacarelli, Ashley Azar, Manali Potnis, Gregg Johannes, Joshua Mell

Mol Biol Cell· May 2022

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The bacterial microbiota of Hunner lesion interstitial cystitis/bladder pain syndrome.
J Curtis Nickel, Garth D Ehrlich, Jaroslaw E Krol, Azad Ahmed, Bhaswati Sen, Joshua C Mell

BJU Int· January 2022

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Pre-vaccination frequency of circulatory Tfh is associated with robust immune response to TV003 dengue vaccine.
Abdullah M Izmirly, Adam-Nicolas Pelletier, Jennifer Connors, Bhavani Taramangalam, Sawsan O Alturki, Joshua C Mell

PLoS Pathog· January 2022

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Transition of Serotype 35B Pneumococci From Commensal to Prevalent Virulent Strain in Children.
Naoko Fuji, Michael Pichichero, Rachel L Ehrlich, Joshua Chang Mell, Garth D Ehrlich

Front Cell Infect Microbiol· November 2021

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Learning, visualizing and exploring 16S rRNA structure using an attention-based deep neural network.
Zhengqiao Zhao, Stephen Woloszynek, Felix Agbavor, Joshua Chang Mell, Bahrad A Sokhansanj

PLoS Comput Biol· September 2021

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Species-Level Profiling of Bacterial Microbiomes Reveals High Variability Across Short Spatial Scales at Different Taxonomic Resolutions.
Kayla M Socarras, Joshua P Earl, Jaroslaw E Krol, Archana Bhat, Max Pabilonia, Joshua Chang Mell

Genet Test Mol Biomarkers· August 2021

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Phase Variation in HMW1A Controls a Phenotypic Switch in Haemophilus influenzae Associated with Pathoadaptation during Persistent Infection.
Ariadna Fernández-Calvet, Begoña Euba, Celia Gil-Campillo, Arancha Catalan-Moreno, Javier Moleres, Joshua C Mell

mBio· June 2021

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Maf1 limits RNA polymerase III-directed transcription to preserve genomic integrity and extend lifespan.
Chiaki Noguchi, Lucy Wang, Mihir Shetty, Joshua Chang Mell, Christian Sell

Cell Cycle· February 2021

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Genome-wide analysis of DNA uptake across the outer membrane of naturally competent .
Marcelo Mora, Joshua Chang Mell, Garth D Ehrlich, Rachel L Ehrlich, Rosemary J Redfield

iScience· January 2021

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