Publications by authors named "Joshua R Herr"

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The persistence and stabilization of auxiliary genes in the human skin virome.
Ema H Graham, Wesley A Tom, Alison C Neujahr, Michael S Adamowicz, Jennifer L Clarke, Joshua R Herr

Virol J· March 2023

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Genome Sequence of Feline Papillomavirus Strain P20 Assembled from Metagenomic Data from the Skin of a House Cat Owner.
Ema H Graham, Michael S Adamowicz, Peter C Angeletti, Jennifer L Clarke, Samodha C Fernando, Joshua R Herr

Microbiol Resour Announc· July 2022

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Association analyses of host genetics, root-colonizing microbes, and plant phenotypes under different nitrogen conditions in maize.
Michael A Meier, Gen Xu, Martha G Lopez-Guerrero, Guangyong Li, Christine Smith, Joshua R Herr

Elife· July 2022

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The application of the skin virome for human identification.
Ema H Graham, Jennifer L Clarke, Samodha C Fernando, Joshua R Herr, Michael S Adamowicz

Forensic Sci Int Genet· March 2022

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Improving Taxonomic Delimitation of Fungal Species in the Age of Genomics and Phenomics.
Ashley Stengel, Kimberly M Stanke, Amanda C Quattrone, Joshua R Herr

Front Microbiol· February 2022

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Global Distribution and Richness of and Related Species Inferred From Public Databases and Amplicon Sequencing Datasets.
Rachel A Koch, Joshua R Herr

Front Microbiol· November 2021

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Transcriptomics Reveals the Putative Mycoparasitic Strategy of the Mushroom on Species of the Mushroom Genus .
Rachel A Koch, Joshua R Herr

mSystems· October 2021

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Symbiotic nitrogen fixation in the reproductive structures of a basidiomycete fungus.
Rachel A Koch, Gyeong Mee Yoon, Uma K Aryal, Kathleen Lail, Mojgan Amirebrahimi, Joshua R Herr

Curr Biol· September 2021

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Rhizosphere Microbiomes in a Historical Maize-Soybean Rotation System Respond to Host Species and Nitrogen Fertilization at the Genus and Subgenus Levels.
Michael A Meier, Martha G Lopez-Guerrero, Ming Guo, Marty R Schmer, Joshua R Herr

Appl Environ Microbiol· May 2021

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Complete Genome Sequence of sp. Strain FeAm09, a Moderately Acidophilic Soil Bacterium.
Pooja Yadav, Sanjay Antony-Babu, Erin Hayes, Olivia M Healy, Donald Pan, Joshua R Herr

Microbiol Resour Announc· January 2021

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Sequence-based classification and identification of Fungi.
David Hibbett, Kessy Abarenkov, Urmas Kõljalg, Maarja Öpik, Benli Chai, Joshua R Herr

Mycologia· January 2018

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Genome Sequence of Fusarium Isolate MYA-4552 from the Midgut of Anoplophora glabripennis, an Invasive, Wood-Boring Beetle.
Joshua R Herr, Erin D Scully, Scott M Geib, Kelli Hoover, John E Carlson

Genome Announc· July 2016

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The khmer software package: enabling efficient nucleotide sequence analysis.
Michael R Crusoe, Hussien F Alameldin, Sherine Awad, Elmar Boucher, Adam Caldwell, Joshua R Herr

F1000Res· November 2015

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Towards the unification of sequence-based classification and sequence-based identification of host-associated microorganisms.
Joshua R Herr, Maarja Opik, David S Hibbett

New Phytol· January 2015

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Metagenomic profiling reveals lignocellulose degrading system in a microbial community associated with a wood-feeding beetle.
Erin D Scully, Scott M Geib, Kelli Hoover, Ming Tien, Susannah G Tringe, Joshua R Herr

PLoS One· April 2014

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Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis.
Emilie Tisserant, Mathilde Malbreil, Alan Kuo, Annegret Kohler, Aikaterini Symeonidi, Joshua R Herr

Proc Natl Acad Sci U S A· December 2013

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Bioenergy from trees.
Joshua R Herr

New Phytol· October 2011

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Ectomycorrhizal fungi and the biotrophy-saprotrophy continuum.
Roger T Koide, Jori N Sharda, Joshua R Herr, Glenna M Malcolm

New Phytol· May 2008

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