Publications by authors named "Joshua S Rest"

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Persistent mirusvirus infection in the marine protist Aurantiochytrium.
Dudley Chung, Nikolaj Brask, Sari Matar, Lucie Gallot-Lavallée, Eric S Pringle, Joshua S Rest

Nat Commun· November 2025

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Proteome remodeling in the zoospore-to-vegetative cell transition of the stramenopile Aurantiochytrium limacinum reveals candidate ectoplasmic network proteins.
Alejandro Gil-Gomez, Ben Leyland, Anbarasu Karthikaichamy, Rebecca C Adikes, David Q Matus, Joshua S Rest

PLoS One· July 2025

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Wiring Between Close Nodes in Molecular Networks Evolves More Quickly Than Between Distant Nodes.
Alejandro Gil-Gomez, Joshua S Rest

Mol Biol Evol· May 2024

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The protist Aurantiochytrium has universal subtelomeric rDNAs and is a host for mirusviruses.
Jackie L Collier, Joshua S Rest, Lucie Gallot-Lavallée, Erik Lavington, Alan Kuo

Curr Biol· December 2023

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Horizontal Gene Transfer and Fusion Spread Carotenogenesis Among Diverse Heterotrophic Protists.
Mariana Rius, Joshua S Rest, Gina V Filloramo, Anna M G Novák Vanclová, John M Archibald

Genome Biol Evol· March 2023

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Evolution of pathogen response genes associated with increased disease susceptibility during adaptation to an extreme drought in a Brassica rapa plant population.
Niamh B O'Hara, Steven J Franks, Nolan C Kane, Silas Tittes, Joshua S Rest

BMC Ecol Evol· April 2021

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Rapid evolutionary changes in gene expression in response to climate fluctuations.
Elena Hamann, Christopher S Pauli, Zoé Joly-Lopez, Simon C Groen, Joshua S Rest

Mol Ecol· January 2021

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Genetic tool development in marine protists: emerging model organisms for experimental cell biology.
Drahomíra Faktorová, R Ellen R Nisbet, José A Fernández Robledo, Elena Casacuberta, Lisa Sudek, Cristina Aresté, Joshua S Rest

Nat Methods· May 2020

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Publisher Correction: Genetic tool development in marine protists: emerging model organisms for experimental cell biology.
Drahomíra Faktorová, R Ellen R Nisbet, José A Fernández Robledo, Elena Casacuberta, Lisa Sudek, Cristina Aresté, Joshua S Rest

Nat Methods· May 2020

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Swimming, gliding, and rolling toward the mainstream: cell biology of marine protists.
Jackie L Collier, Joshua S Rest

Mol Biol Cell· May 2019

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What Makes a Kinase Promiscuous for Inhibitors?
Sonya M Hanson, George Georghiou, Manish K Thakur, W Todd Miller, Joshua S Rest

Cell Chem Biol· March 2019

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Widespread ancient whole-genome duplications in Malpighiales coincide with Eocene global climatic upheaval.
Liming Cai, Zhenxiang Xi, André M Amorim, M Sugumaran, Joshua S Rest

New Phytol· January 2019

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Rapid genome-wide evolution in Brassica rapa populations following drought revealed by sequencing of ancestral and descendant gene pools.
Steven J Franks, Nolan C Kane, Niamh B O'Hara, Silas Tittes, Joshua S Rest

Mol Ecol· August 2016

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Meta-analysis and meta-regression of transcriptomic responses to water stress in Arabidopsis.
Joshua S Rest, Olivia Wilkins, Wei Yuan, Michael D Purugganan, Jessica Gurevitch

Plant J· February 2016

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Increased susceptibility to fungal disease accompanies adaptation to drought in Brassica rapa.
Niamh B O'Hara, Joshua S Rest, Steven J Franks

Evolution· January 2016

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Phylogenomics and coalescent analyses resolve extant seed plant relationships.
Zhenxiang Xi, Joshua S Rest, Charles C Davis

PLoS One· December 2014

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Coalescent versus concatenation methods and the placement of Amborella as sister to water lilies.
Zhenxiang Xi, Liang Liu, Joshua S Rest, Charles C Davis

Syst Biol· November 2014

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Ancestral resurrection of the Drosophila S2E enhancer reveals accessible evolutionary paths through compensatory change.
Carlos Martinez, Joshua S Rest, Ah-Ram Kim, Michael Ludwig, Martin Kreitman

Mol Biol Evol· April 2014

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Coevolution trumps pleiotropy: carbon assimilation traits are independent of metabolic network structure in budding yeast.
Dana A Opulente, Christopher M Morales, Lucas B Carey, Joshua S Rest

PLoS One· July 2013

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Massive mitochondrial gene transfer in a parasitic flowering plant clade.
Zhenxiang Xi, Yuguo Wang, Robert K Bradley, M Sugumaran, Christopher J Marx, Joshua S Rest

PLoS Genet· June 2013

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Nonlinear fitness consequences of variation in expression level of a eukaryotic gene.
Joshua S Rest, Christopher M Morales, John B Waldron, Dana A Opulente, Julius Fisher

Mol Biol Evol· February 2013

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Contribution of transcription factor binding site motif variants to condition-specific gene expression patterns in budding yeast.
Joshua S Rest, Kevin Bullaughey, Geoffrey P Morris, Wen-Hsiung Li

PLoS One· August 2012

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Horizontal transfer of expressed genes in a parasitic flowering plant.
Zhenxiang Xi, Robert K Bradley, Kenneth J Wurdack, Km Wong, M Sugumaran, Joshua S Rest

BMC Genomics· June 2012

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Common fragile sites are characterized by histone hypoacetylation.
Yanwen Jiang, Isabelle Lucas, David J Young, Elizabeth M Davis, Theodore Karrison, Joshua S Rest

Hum Mol Genet· December 2009

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Sulfate activation enzymes: phylogeny and association with pyrophosphatase.
Michael E Bradley, Joshua S Rest, Wen-Hsiung Li, Nancy B Schwartz

J Mol Evol· January 2009

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