Publications by authors named "Judith A Blake"

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Distal airway epithelial progenitors mediate TGF-β release to drive lung CD8 T induction following mucosal BCG vaccination.
Judith A Blake, Julia Seifert, Socorro Miranda-Hernandez, Roland Ruscher, Paul R Giacomin

Mucosal Immunol· August 2025

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Biological databases in the age of generative artificial intelligence.
Mihai Pop, Teresa K Attwood, Judith A Blake, Philip E Bourne, Ana Conesa

Bioinform Adv· March 2025

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Mouse Genome Informatics (MGI): latest news from MGD and GXD.
Martin Ringwald, Joel E Richardson, Richard M Baldarelli, Judith A Blake, James A Kadin

Mamm Genome· March 2022

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Reactome and the Gene Ontology: digital convergence of data resources.
Benjamin M Good, Kimberly Van Auken, David P Hill, Huaiyu Mi, Seth Carbon, Judith A Blake

Bioinformatics· October 2021

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Mouse Genome Database (MGD): Knowledgebase for mouse-human comparative biology.
Judith A Blake, Richard Baldarelli, James A Kadin, Joel E Richardson, Cynthia L Smith

Nucleic Acids Res· January 2021

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Investigation of COVID-19 comorbidities reveals genes and pathways coincident with the SARS-CoV-2 viral disease.
Mary E Dolan, David P Hill, Gaurab Mukherjee, Monica S McAndrews, Elissa J Chesler, Judith A Blake

Sci Rep· November 2020

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Investigation of COVID-19 comorbidities reveals genes and pathways coincident with the SARS-CoV-2 viral disease.
Mary E Dolan, David P Hill, Gaurab Mukherjee, Monica S McAndrews, Elissa J Chesler, Judith A Blake

bioRxiv· September 2020

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Integrating image caption information into biomedical document classification in support of biocuration.
Xiangying Jiang, Pengyuan Li, James Kadin, Judith A Blake, Martin Ringwald

Database (Oxford)· January 2020

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Cisplatin-resistant triple-negative breast cancer subtypes: multiple mechanisms of resistance.
David P Hill, Akeena Harper, Joan Malcolm, Monica S McAndrews, Susan M Mockus, Judith A Blake

BMC Cancer· November 2019

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Mouse Genome Database (MGD) 2019.
Carol J Bult, Judith A Blake, Cynthia L Smith, James A Kadin, Joel E Richardson

Nucleic Acids Res· January 2019

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Curating gene sets: challenges and opportunities for integrative analysis.
Jason Bubier, David Hill, Gaurab Mukherjee, Timothy Reynolds, Erich J Baker, Judith A Blake

Database (Oxford)· January 2019

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An effective biomedical document classification scheme in support of biocuration: addressing class imbalance.
Xiangying Jiang, Martin Ringwald, Judith A Blake, Cecilia Arighi, Gongbo Zhang

Database (Oxford)· January 2019

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Model organism data evolving in support of translational medicine.
Douglas G Howe, Judith A Blake, Yvonne M Bradford, Carol J Bult, Brian R Calvi

Lab Anim (NY)· October 2018

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Sensing the cilium, digital capture of ciliary data for comparative genomics investigations.
Karen R Christie, Judith A Blake

Cilia· April 2018

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Improving Interpretation of Cardiac Phenotypes and Enhancing Discovery With Expanded Knowledge in the Gene Ontology.
Ruth C Lovering, Paola Roncaglia, Douglas G Howe, Stanley J F Laulederkind, Varsha K Khodiyar, Judith A Blake

Circ Genom Precis Med· February 2018

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Mouse Genome Informatics (MGI): Resources for Mining Mouse Genetic, Genomic, and Biological Data in Support of Primary and Translational Research.
Janan T Eppig, Cynthia L Smith, Judith A Blake, Martin Ringwald, James A Kadin

Methods Mol Biol· January 2018

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Mouse Genome Database (MGD)-2018: knowledgebase for the laboratory mouse.
Cynthia L Smith, Judith A Blake, James A Kadin, Joel E Richardson, Carol J Bult

Nucleic Acids Res· January 2018

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The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology.
Jingshan Huang, Karen Eilbeck, Barry Smith, Judith A Blake, Dejing Dou

J Biomed Semantics· November 2017

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Modeling biochemical pathways in the gene ontology.
David P Hill, Peter D'Eustachio, Tanya Z Berardini, Christopher J Mungall, Nikolai Renedo, Judith A Blake

Database (Oxford)· November 2017

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OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data.
Jingshan Huang, Fernando Gutierrez, Harrison J Strachan, Dejing Dou, Weili Huang, Judith A Blake

J Biomed Semantics· October 2017

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Gene regulation knowledge commons: community action takes care of DNA binding transcription factors.
Sushil Tripathi, Steven Vercruysse, Konika Chawla, Karen R Christie, Judith A Blake

Database (Oxford)· January 2017

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Mouse Genome Database (MGD)-2017: community knowledge resource for the laboratory mouse.
Judith A Blake, Janan T Eppig, James A Kadin, Joel E Richardson, Cynthia L Smith

Nucleic Acids Res· January 2017

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Protein Ontology (PRO): enhancing and scaling up the representation of protein entities.
Darren A Natale, Cecilia N Arighi, Judith A Blake, Jonathan Bona, Chuming Chen

Nucleic Acids Res· January 2017

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The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.
Alexander D Diehl, Terrence F Meehan, Yvonne M Bradford, Matthew H Brush, Wasila M Dahdul, Judith A Blake

J Biomed Semantics· July 2016

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The development of non-coding RNA ontology.
Jingshan Huang, Karen Eilbeck, Barry Smith, Judith A Blake, Dejing Dou

Int J Data Min Bioinform· January 2016

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