Publications by authors named "Julian Garneau"

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From global to local: rethinking the design of probiotic intervention strategies.
Pascale Vonaesch, Julian R Garneau, Maria Gloria Dominguez-Bello

Trends Microbiol· December 2025

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A Phylogenetic Host-Range Index Reveals Ecological Constraints in Phage Specialisation and Virulence.
Clara Torres-Barceló, Claudine Boyer, Julian R Garneau, Stéphane Poussier, Isabelle Robène

Mol Ecol· September 2025

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Short-read and Long-read PCR-Free Sequencing of Bacteriophages Using Ultra-Low Starting DNA Input.
Thania Sbaghdi, Florence Jagorel, Marc Monot, Julian R Garneau

J Biomol Tech· April 2025

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Dual RNA-seq study of the dynamics of coding and non-coding RNA expression during infection in a mouse model.
Victor Kreis, Claire Toffano-Nioche, Cécile Denève-Larrazet, Jean-Christophe Marvaud, Julian R Garneau

mSystems· December 2024

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Exposure of gut bacterial isolates to the anthelminthic drugs, ivermectin and moxidectin, leads to antibiotic-like phenotypes of growth inhibition and adaptation.
Julian Dommann, Jennifer Keiser, Julian Garneau, Alison Gandelin, Carlo Casanova

Commun Biol· November 2024

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Novel phages of unveil numerous potential auxiliary metabolic genes.
Chloé Feltin, Julian R Garneau, Cindy E Morris, Annette Bérard, Clara Torres-Barceló

J Gen Virol· June 2024

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Comparative Genomics of Clostridioides difficile.
Sandra Janezic, Julian R Garneau, Marc Monot

Adv Exp Med Biol· January 2024

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The Response of the Honey Bee Gut Microbiota to Is Modulated by the Probiotic and the Neonicotinoid Thiamethoxam.
Thania Sbaghdi, Julian R Garneau, Simon Yersin, Frédérique Chaucheyras-Durand, Michel Bocquet

Microorganisms· January 2024

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Molecular and evolutionary basis of O-antigenic polysaccharide-driven phage sensitivity in environmental pseudomonads.
Jordan Vacheron, Clara M Heiman, Julian R Garneau, Peter Kupferschmied, Ronnie de Jonge

Microbiol Spectr· December 2023

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Gut microbiomes of agropastoral children from the Adadle region of Ethiopia reflect their unique dietary habits.
Simon Yersin, Julian R Garneau, Pierre H H Schneeberger, Kadra Ali Osman, Colin Ivano Cercamondi

Sci Rep· December 2023

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Enrichment, Sequencing, and Identification of DNA Bacteriophages from Fecal Samples.
Quentin Lamy-Besnier, Julian R Garneau

Methods Mol Biol· December 2023

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Virulence and genomic diversity among clinical isolates of ST1 (BI/NAP1/027) Clostridioides difficile.
Qiwen Dong, Huaiying Lin, Marie-Maude Allen, Julian R Garneau, Jonathan K Sia

Cell Rep· August 2023

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Chromosome folding and prophage activation reveal specific genomic architecture for intestinal bacteria.
Quentin Lamy-Besnier, Amaury Bignaud, Julian R Garneau, Marie Titecat, Devon E Conti

Microbiome· May 2023

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Clostridioides difficile S-Layer Protein A (SlpA) Serves as a General Phage Receptor.
Alexia L M Royer, Andrew A Umansky, Marie-Maude Allen, Julian R Garneau, Maicol Ospina-Bedoya

Microbiol Spectr· February 2023

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Virulence and genomic diversity among clinical isolates of ST1 (BI/NAP1/027) .
Qiwen Dong, Huaiying Lin, Marie-Maude Allen, Julian R Garneau, Jonathan K Sia

bioRxiv· January 2023

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Author Correction: High-throughput identification of viral termini and packaging mechanisms in virome datasets using PhageTermVirome.
Julian R Garneau, Véronique Legrand, Martial Marbouty, Maximilian O Press, Dean R Vik

Sci Rep· May 2022

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High-throughput identification of viral termini and packaging mechanisms in virome datasets using PhageTermVirome.
Julian R Garneau, Véronique Legrand, Martial Marbouty, Maximilian O Press, Dean R Vik

Sci Rep· September 2021

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Type I toxin-antitoxin systems contribute to the maintenance of mobile genetic elements in Clostridioides difficile.
Johann Peltier, Audrey Hamiot, Julian R Garneau, Pierre Boudry, Anna Maikova

Commun Biol· November 2020

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Multilocus Variable-Number Tandem-Repeat Analysis of Clostridioides difficile Clusters in Ribotype 027 Isolates and Lack of Association with Clinical Outcomes.
Julian R Garneau, Claire Nour Abou Chakra, Louis-Charles Fortier, Annie-Claude Labbé, Andrew E Simor

J Clin Microbiol· May 2019

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Comparative Genomics of Clostridium difficile.
Sandra Janezic, Julian R Garneau, Marc Monot

Adv Exp Med Biol· June 2018

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High Prevalence and Genetic Diversity of Large phiCD211 (phiCDIF1296T)-Like Prophages in Clostridioides difficile.
Julian R Garneau, Ognjen Sekulovic, Bruno Dupuy, Olga Soutourina, Marc Monot

Appl Environ Microbiol· February 2018

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PhageTerm: a tool for fast and accurate determination of phage termini and packaging mechanism using next-generation sequencing data.
Julian R Garneau, Florence Depardieu, Louis-Charles Fortier, David Bikard, Marc Monot

Sci Rep· August 2017

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Factors Associated With Complications of Clostridium difficile Infection in a Multicenter Prospective Cohort.
Claire Nour Abou Chakra, Allison McGeer, Annie-Claude Labbé, Andrew E Simor, Wayne L Gold, Julian R Garneau

Clin Infect Dis· December 2015

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Characterization of temperate phages infecting Clostridium difficile isolates of human and animal origins.
Ognjen Sekulovic, Julian R Garneau, Audrey Néron, Louis-Charles Fortier

Appl Environ Microbiol· April 2014

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Prevention of Clostridium difficile spore formation by sub-inhibitory concentrations of tigecycline and piperacillin/tazobactam.
Julian R Garneau, Louis Valiquette, Louis-Charles Fortier

BMC Infect Dis· January 2014

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