Publications by authors named "Julian Watts"

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Quantitative proteogenomic profiling of epidermal barrier formation in vitro.
Jason M Winget, Julian D Watts, Michael R Hoopmann, Teresa DiColandrea, Michael K Robinson

J Dermatol Sci· June 2015

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State of the human proteome in 2013 as viewed through PeptideAtlas: comparing the kidney, urine, and plasma proteomes for the biology- and disease-driven Human Proteome Project.
Terry Farrah, Eric W Deutsch, Gilbert S Omenn, Zhi Sun, Julian D Watts

J Proteome Res· January 2014

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An assessment of current bioinformatic solutions for analyzing LC-MS data acquired by selected reaction monitoring technology.
Mi-Youn K Brusniak, Caroline S Chu, Ulrike Kusebauch, Mark J Sartain, Julian D Watts

Proteomics· April 2012

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A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas.
Terry Farrah, Eric W Deutsch, Gilbert S Omenn, David S Campbell, Zhi Sun, Julian D Watts

Mol Cell Proteomics· September 2011

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Halogenated peptides as internal standards (H-PINS): introduction of an MS-based internal standard set for liquid chromatography-mass spectrometry.
Hamid Mirzaei, Mi-Youn Brusniak, Lukas N Mueller, Simon Letarte, Julian D Watts

Mol Cell Proteomics· August 2009

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Quantitative proteomics identifies a Dab2/integrin module regulating cell migration.
Anjali Teckchandani, Natalie Toida, Jake Goodchild, Christine Henderson, Julian Watts

J Cell Biol· July 2009

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Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.
Bernd Wollscheid, Damaris Bausch-Fluck, Christine Henderson, Robert O'Brien, Miriam Bibel, Julian D Watts

Nat Biotechnol· April 2009

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Differential Plasma Glycoproteome of p19 Skin Cancer Mouse Model Using the Corra Label-Free LC-MS Proteomics Platform.
Simon Letarte, Mi-Youn Brusniak, David Campbell, James Eddes, Christopher J Kemp, Julian D Watts

Clin Proteomics· December 2008

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Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.
Mi-Youn Brusniak, Bernd Bodenmiller, David Campbell, Kelly Cooke, James Eddes, Julian D Watts

BMC Bioinformatics· December 2008

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Comparative evaluation of current peptide production platforms used in absolute quantification in proteomics.
Hamid Mirzaei, Joshua K McBee, Julian Watts, Ruedi Aebersold

Mol Cell Proteomics· April 2008

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Assessing bias in experiment design for large scale mass spectrometry-based quantitative proteomics.
Amol Prakash, Brian Piening, Jeff Whiteaker, Heidi Zhang, Scott A Shaffer, Julian Watts

Mol Cell Proteomics· October 2007

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Head-to-head comparison of serum fractionation techniques.
Jeffrey R Whiteaker, Heidi Zhang, Jimmy K Eng, Ruihua Fang, Brian D Piening, Julian Watts

J Proteome Res· February 2007

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Mass spectrometric detection of tissue proteins in plasma.
Hui Zhang, Alvin Y Liu, Paul Loriaux, Bernd Wollscheid, Yong Zhou, Julian D Watts

Mol Cell Proteomics· January 2007

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Quantitative proteomic analysis of B cell lipid rafts reveals that ezrin regulates antigen receptor-mediated lipid raft dynamics.
Neetu Gupta, Bernd Wollscheid, Julian D Watts, Barbara Scheer, Ruedi Aebersold

Nat Immunol· June 2006

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Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry.
Frank Desiere, Eric W Deutsch, Alexey I Nesvizhskii, Parag Mallick, Nichole L King, Julian D Watts

Genome Biol· October 2005

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Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry.
W Andy Tao, Bernd Wollscheid, Robert O'Brien, Jimmy K Eng, Xiao-jun Li, Julian D Watts

Nat Methods· August 2005

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Lipid raft proteins and their identification in T lymphocytes.
Bernd Wollscheid, Priska D von Haller, Eugene Yi, Samuel Donohoe, Kelly Vaughn, Julian D Watts

Subcell Biochem· November 2004

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Proteomics/genomics and signaling in lymphocytes.
Bernd Wollscheid, Julian D Watts, Ruedi Aebersold

Curr Opin Immunol· June 2004

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PTPH1 is a predominant protein-tyrosine phosphatase capable of interacting with and dephosphorylating the T cell receptor zeta subunit.
Margaret S Sozio, Meredith A Mathis, Jennifer A Young, Sebastien Wälchli, Lisa A Pitcher, Julian D Watts

J Biol Chem· February 2004

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The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: I. Statistically annotated datasets for peptide sequences and proteins identified via the application of ICAT and tandem mass spectrometry to proteins copurifying with T cell lipid rafts.
Priska D von Haller, Eugene Yi, Samuel Donohoe, Kelly Vaughn, Andrew Keller, Julian D Watts

Mol Cell Proteomics· July 2003

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The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: II. Evaluation of tandem mass spectrometry methodologies for large-scale protein analysis, and the application of statistical tools for data analysis and interpretation.
Priska D von Haller, Eugene Yi, Samuel Donohoe, Kelly Vaughn, Andrew Keller, Julian D Watts

Mol Cell Proteomics· July 2003

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The need for national centers for proteomics.
Ruedi Aebersold, Julian D Watts

Nat Biotechnol· July 2002

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Quantitative proteome analysis by solid-phase isotope tagging and mass spectrometry.
Huilin Zhou, Jeffrey A Ranish, Julian D Watts, Ruedi Aebersold

Nat Biotechnol· May 2002

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