Publications by authors named "Julie Koeman"

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DNA methylation dynamics and dysregulation delineated by high-throughput profiling in the mouse.
Wanding Zhou, Toshinori Hinoue, Bret Barnes, Owen Mitchell, Waleed Iqbal, Julie M Koeman

Cell Genom· July 2022

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SWI/SNF Antagonism of PRC2 Mediates Estrogen-Induced Progesterone Receptor Expression.
Mike R Wilson, Jake J Reske, Julie Koeman, Marie Adams, Niraj R Joshi

Cells· March 2022

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Evaluation of whole-genome DNA methylation sequencing library preparation protocols.
Jacob Morrison, Julie M Koeman, Benjamin K Johnson, Kelly K Foy, Ian Beddows

Epigenetics Chromatin· June 2021

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Multisite Evaluation of Next-Generation Methods for Small RNA Quantification.
Zachary T Herbert, Jyothi Thimmapuram, Shaojun Xie, Jamie P Kershner, Fred W Kolling, Julie Koeman

J Biomol Tech· July 2020

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Integrated Epigenome, Exome, and Transcriptome Analyses Reveal Molecular Subtypes and Homeotic Transformation in Uterine Fibroids.
Jitu Wilson George, Huihui Fan, Benjamin Johnson, Tyler James Carpenter, Kelly Katherine Foy, Julie Koeman

Cell Rep· December 2019

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ARID1A and PI3-kinase pathway mutations in the endometrium drive epithelial transdifferentiation and collective invasion.
Mike R Wilson, Jake J Reske, Jeanne Holladay, Genna E Wilber, Mary Rhodes, Julie Koeman

Nat Commun· August 2019

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Genomic Status of Potentiates Sensitivity to MET and MEK Inhibition in NF1-Related Malignant Peripheral Nerve Sheath Tumors.
Jacqueline D Peacock, Matthew G Pridgeon, Elizabeth A Tovar, Curt J Essenburg, Megan Bowman, Julie Koeman

Cancer Res· July 2018

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Discordant inheritance of chromosomal and extrachromosomal DNA elements contributes to dynamic disease evolution in glioblastoma.
Ana C deCarvalho, Hoon Kim, Laila M Poisson, Mary E Winn, Claudius Mueller, Julie Koeman

Nat Genet· May 2018

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The genomic landscape of tuberous sclerosis complex.
Katie R Martin, Wanding Zhou, Megan J Bowman, Juliann Shih, Kit Sing Au, Julie Koeman

Nat Commun· June 2017

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Chromosome instability drives phenotypic switching to metastasis.
ChongFeng Gao, Yanli Su, Julie Koeman, Elizabeth Haak, Karl Dykema

Proc Natl Acad Sci U S A· December 2016

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Human biosample authentication using the high-throughput, cost-effective SNPtrace(TM) system.
May M Y Liang-Chu, Mamie Yu, Peter M Haverty, Julie Koeman, Janet Ziegle

PLoS One· January 2016

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Partial deletion of the sulfate transporter SLC13A1 is associated with an osteochondrodysplasia in the Miniature Poodle breed.
Mark W Neff, John S Beck, Julie M Koeman, Elissa Boguslawski, Lisa Kefene

PLoS One· July 2013

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Overexpression of HGF Promotes HBV-Induced Hepatocellular Carcinoma Progression and Is an Effective Indicator for Met-Targeting Therapy.
Qian Xie, Yanli Su, Karl Dykema, Jennifer Johnson, Julie Koeman

Genes Cancer· July 2013

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Genome and transcriptome sequencing in prospective metastatic triple-negative breast cancer uncovers therapeutic vulnerabilities.
David W Craig, Joyce A O'Shaughnessy, Jeffrey A Kiefer, Jessica Aldrich, Shripad Sinari, Julie Koeman

Mol Cancer Ther· January 2013

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Genome and transcriptome sequencing of lung cancers reveal diverse mutational and splicing events.
Jinfeng Liu, William Lee, Zhaoshi Jiang, Zhongqiang Chen, Suchit Jhunjhunwala, Julie Koeman

Genome Res· December 2012

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Expression of the PTTG1 oncogene is associated with aggressive clear cell renal cell carcinoma.
Bill Wondergem, Zhongfa Zhang, Dachuan Huang, Choon Kiat Ong, Julie Koeman

Cancer Res· September 2012

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Hepatocyte growth factor (HGF) autocrine activation predicts sensitivity to MET inhibition in glioblastoma.
Qian Xie, Robert Bradley, Liang Kang, Julie Koeman, Maria Libera Ascierto

Proc Natl Acad Sci U S A· January 2012

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Chromosomal amplification of leucine-rich repeat kinase-2 (LRRK2) is required for oncogenic MET signaling in papillary renal and thyroid carcinomas.
Brendan D Looyenga, Kyle A Furge, Karl J Dykema, Julie Koeman, Pamela J Swiatek

Proc Natl Acad Sci U S A· January 2011

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Met amplification and tumor progression in Cdkn2a-deficient melanocytes.
Matthew W Vanbrocklin, James P Robinson, Todd Whitwam, Adam R Guilbeault, Julie Koeman

Pigment Cell Melanoma Res· August 2009

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Met induces diverse mammary carcinomas in mice and is associated with human basal breast cancer.
Carrie R Graveel, Jack D DeGroot, Yanli Su, Julie Koeman, Karl Dykema

Proc Natl Acad Sci U S A· August 2009

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Identification of copy number alterations and its association with pathological features in clear cell and papillary RCC.
Daisuke Matsuda, Sok Kean Khoo, Aaron Massie, Masatsugu Iwamura, Jindong Chen, Julie Koeman

Cancer Lett· December 2008

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Somatic pairing of chromosome 19 in renal oncocytoma is associated with deregulated EGLN2-mediated [corrected] oxygen-sensing response.
Julie M Koeman, Ryan C Russell, Min-Han Tan, David Petillo, Michael Westphal

PLoS Genet· September 2008

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Chromosome instability, chromosome transcriptome, and clonal evolution of tumor cell populations.
ChongFeng Gao, Kyle Furge, Julie Koeman, Karl Dykema, Yanli Su

Proc Natl Acad Sci U S A· May 2007

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Detection of DNA copy number changes and oncogenic signaling abnormalities from gene expression data reveals MYC activation in high-grade papillary renal cell carcinoma.
Kyle A Furge, Jindong Chen, Julie Koeman, Pamela Swiatek, Karl Dykema

Cancer Res· April 2007

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Proliferation and invasion: plasticity in tumor cells.
Chong-Feng Gao, Qian Xie, Yan-Li Su, Julie Koeman, Sok Kean Khoo

Proc Natl Acad Sci U S A· July 2005

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