Publications by authors named "Jun Mashima"

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DDBJ update in 2025: system integration for global data-sharing including pathogen surveillance.
Takeshi Ara, Yuichi Kodama, Takatomo Fujisawa, Takehide Kosuge, Kyungbum Lee, Jun Mashima

Nucleic Acids Res· November 2025

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DDBJ update in 2024: the DDBJ Group Cloud service for sharing pre-publication data.
Yuichi Kodama, Takeshi Ara, Asami Fukuda, Toshiaki Tokimatsu, Jun Mashima

Nucleic Acids Res· January 2025

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DDBJ update in 2023: the MetaboBank for metabolomics data and associated metadata.
Takeshi Ara, Yuichi Kodama, Toshiaki Tokimatsu, Asami Fukuda, Takehide Kosuge, Jun Mashima

Nucleic Acids Res· January 2024

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DNA Data Bank of Japan (DDBJ) update report 2022.
Yasuhiro Tanizawa, Takatomo Fujisawa, Yuichi Kodama, Takehide Kosuge, Jun Mashima

Nucleic Acids Res· January 2023

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DNA Data Bank of Japan (DDBJ) update report 2021.
Toshihisa Okido, Yuichi Kodama, Jun Mashima, Takehide Kosuge, Takatomo Fujisawa

Nucleic Acids Res· January 2022

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DDBJ update: streamlining submission and access of human data.
Asami Fukuda, Yuichi Kodama, Jun Mashima, Takatomo Fujisawa, Osamu Ogasawara

Nucleic Acids Res· January 2021

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DDBJ Database updates and computational infrastructure enhancement.
Osamu Ogasawara, Yuichi Kodama, Jun Mashima, Takehide Kosuge, Takatomo Fujisawa

Nucleic Acids Res· January 2020

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DDBJ update: the Genomic Expression Archive (GEA) for functional genomics data.
Yuichi Kodama, Jun Mashima, Takehide Kosuge, Osamu Ogasawara

Nucleic Acids Res· January 2019

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DNA Data Bank of Japan: 30th anniversary.
Yuichi Kodama, Jun Mashima, Takehide Kosuge, Eli Kaminuma, Osamu Ogasawara

Nucleic Acids Res· January 2018

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DNA Data Bank of Japan.
Jun Mashima, Yuichi Kodama, Takatomo Fujisawa, Toshiaki Katayama, Yoshihiro Okuda

Nucleic Acids Res· January 2017

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DNA data bank of Japan (DDBJ) progress report.
Jun Mashima, Yuichi Kodama, Takehide Kosuge, Takatomo Fujisawa, Toshiaki Katayama

Nucleic Acids Res· January 2016

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The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data.
Yuichi Kodama, Jun Mashima, Takehide Kosuge, Toshiaki Katayama, Takatomo Fujisawa

Nucleic Acids Res· January 2015

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Toward richer metadata for microbial sequences: replacing strain-level NCBI taxonomy taxids with BioProject, BioSample and Assembly records.
Scott Federhen, Karen Clark, Tanya Barrett, Helen Parkinson, James Ostell, Jun Mashima

Stand Genomic Sci· June 2014

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DDBJ progress report: a new submission system for leading to a correct annotation.
Takehide Kosuge, Jun Mashima, Yuichi Kodama, Takatomo Fujisawa, Eli Kaminuma

Nucleic Acids Res· January 2014

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DDBJ new system and service refactoring.
Osamu Ogasawara, Jun Mashima, Yuichi Kodama, Eli Kaminuma, Yasukazu Nakamura

Nucleic Acids Res· January 2013

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The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments.
Yuichi Kodama, Jun Mashima, Eli Kaminuma, Takashi Gojobori, Osamu Ogasawara

Nucleic Acids Res· January 2012

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DDBJ progress report.
Eli Kaminuma, Takehide Kosuge, Yuichi Kodama, Hideo Aono, Jun Mashima

Nucleic Acids Res· January 2011

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DDBJ launches a new archive database with analytical tools for next-generation sequence data.
Eli Kaminuma, Jun Mashima, Yuichi Kodama, Takashi Gojobori, Osamu Ogasawara

Nucleic Acids Res· January 2010

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The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts.

Nucleic Acids Res· January 2008

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Evidence standards in experimental and inferential INSDC Third Party Annotation data.
Guy Cochrane, Kirsty Bates, Rolf Apweiler, Yoshio Tateno, Jun Mashima

OMICS· November 2007

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Exploration and grading of possible genes from 183 bacterial strains by a common protocol to identification of new genes: Gene Trek in Prokaryote Space (GTPS).
Takehide Kosuge, Takashi Abe, Toshihisa Okido, Naoto Tanaka, Masaki Hirahata, Jun Mashima

DNA Res· December 2006

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Integrative annotation of 21,037 human genes validated by full-length cDNA clones.
Tadashi Imanishi, Takeshi Itoh, Yutaka Suzuki, Claire O'Donovan, Satoshi Fukuchi, Jun Mashima

PLoS Biol· June 2004

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