Publications by authors named "Junchen Yang"

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DiCoLo: Integration-free and cluster-free detection of localized differential gene co-expression in single-cell data.
Ruiqi Li, Junchen Yang, Pei-Chun Su, Ariel Jaffe, Ofir Lindenbaum

bioRxiv· November 2025

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Multi-omic Characterization of HIV Effects at Single Cell Level across Human Brain Regions.
Junchen Yang, Kriti Agrawal, Jay Stanley, Ruiqi Li, Nicholas Jacobs

bioRxiv· February 2025

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Principled PCA separates signal from noise in omics count data.
Jay S Stanley, Junchen Yang, Ruiqi Li, Ofir Lindenbaum, Dmitry Kobak

bioRxiv· February 2025

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The single-cell opioid responses in the context of HIV (SCORCH) consortium.
Seth A Ament, Rianne R Campbell, Mary Kay Lobo, Joseph P Receveur, Kriti Agrawal, Junchen Yang

Mol Psychiatry· December 2024

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Organ Boundary Circuits Regulate Sox9+ Alveolar Tuft Cells During Post-Pneumonectomy Lung Regeneration.
Tomohiro Obata, Satoshi Mizoguchi, Allison M Greaney, Taylor Adams, Yifan Yuan, Junchen Yang

bioRxiv· January 2024

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Comprehensive visualization of cell-cell interactions in single-cell and spatial transcriptomics with NICHES.
Micha Sam Brickman Raredon, Junchen Yang, Neeharika Kothapalli, Wesley Lewis, Naftali Kaminski

Bioinformatics· January 2023

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Longitudinal single-cell analysis of a patient receiving adoptive cell therapy reveals potential mechanisms of treatment failure.
Rihao Qu, Yuval Kluger, Junchen Yang, Jun Zhao, David A Hafler

Mol Cancer· December 2022

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Computation and visualization of cell-cell signaling topologies in single-cell systems data using Connectome.
Micha Sam Brickman Raredon, Junchen Yang, James Garritano, Meng Wang, Dan Kushnir

Sci Rep· March 2022

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Computational Study of HCV p7 Channel: Insight into a New Strategy for HCV Inhibitor Design.
Beili Ying, Shichao Pang, Junchen Yang, Yang Zhong, Jingfang Wang

Interdiscip Sci· June 2019

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PredT4SE-Stack: Prediction of Bacterial Type IV Secreted Effectors From Protein Sequences Using a Stacked Ensemble Method.
Yi Xiong, Qiankun Wang, Junchen Yang, Xiaolei Zhu, Dong-Qing Wei

Front Microbiol· October 2018

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Fates of chlorinated volatile organic compounds in aerobic biological treatment processes: the effects of aeration and sludge addition.
Wei-Hsiang Chen, Wen-Ben Yang, Chung-Shin Yuan, Jun-Chen Yang, Qing-Liang Zhao

Chemosphere· May 2014

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Underestimated public health risks caused by overestimated VOC removal in wastewater treatment processes.
Junchen Yang, Kun Wang, Qingliang Zhao, Likun Huang, Chung-Shin Yuan, Wen-Bin Yang

Environ Sci Process Impacts· February 2014

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Comparative assessments of VOC emission rates and associated health risks from wastewater treatment processes.
Wen-Ben Yang, Wei-Hsiang Chen, Chung-Shin Yuan, Jun-Chen Yang, Qing-Liang Zhao

J Environ Monit· September 2012

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[Spectroscopy properties of dissolved organic matter in landfill leachate during corrosion cell-Fenton post-treatment].
Qing-Liang Zhao, Lin Bu, Jun-Chen Yang, Kun Wang

Huan Jing Ke Xue· August 2011

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Characterization of dissolved organic matter during landfill leachate treatment by sequencing batch reactor, aeration corrosive cell-Fenton, and granular activated carbon in series.
Lin Bu, Kun Wang, Qing-Liang Zhao, Liang-Liang Wei, Jing Zhang, Jun-Chen Yang

J Hazard Mater· July 2010

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