Publications by authors named "Justin Zook"

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Characterization of subclonal variants in HG002 Genome in a Bottle reference material as a resource for benchmarking variant callers.
Camille A Daniels, Adetola A Abdulkadir, Megan H Cleveland, Jennifer H McDaniel, David Jáspez, Justin M Zook

Cell Genom· December 2025

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A complete diploid human genome benchmark for personalized genomics.
Nancy F Hansen, Nathan Dwarshuis, Hyun Joo Ji, Arang Rhie, Hailey Loucks, Justin M Zook

bioRxiv· September 2025

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The Platinum Pedigree: a long-read benchmark for genetic variants.
Zev Kronenberg, Cillian Nolan, David Porubsky, Tom Mokveld, William J Rowell, Justin M Zook

Nat Methods· August 2025

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Correction: Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair.
Jennifer H McDaniel, Vaidehi Patel, Nathan D Olson, Hua-Jun He, Zhiyong He, Justin M Zook

Sci Data· August 2025

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Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair.
Jennifer H McDaniel, Vaidehi Patel, Nathan D Olson, Hua-Jun He, Zhiyong He, Justin M Zook

Sci Data· July 2025

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Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair.
Jennifer H McDaniel, Vaidehi Patel, Nathan D Olson, Hua-Jun He, Zhiyong He, Justin M Zook

bioRxiv· June 2025

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Interlaboratory assessment of candidate reference materials for lentiviral vector copy number and integration site measurements.
Hua-Jun He, Zhiyong He, Steven P Lund, Laure Turner, Yongjun Fan, Justin M Zook

Mol Ther Methods Clin Dev· June 2025

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Unraveling the hidden complexity of cancer through long-read sequencing.
Qiuhui Li, Ayse G Keskus, Justin Wagner, Michal B Izydorczyk, Winston Timp, Justin M Zook

Genome Res· April 2025

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Analysis and benchmarking of small and large genomic variants across tandem repeats.
Adam C English, Egor Dolzhenko, Helyaneh Ziaei Jam, Sean K McKenzie, Nathan D Olson, Justin M Zook

Nat Biotechnol· March 2025

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GrapHiC: An Integrative Graph Based Approach for Imputing Missing Hi-C Reads.
Ghulam Murtaza, Justin Wagner, Justin M Zook, Ritambhara Singh

IEEE Trans Comput Biol Bioinform· January 2025

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Small variant benchmark from a complete assembly of X and Y chromosomes.
Justin Wagner, Nathan D Olson, Jennifer McDaniel, Lindsay Harris, Brendan J Pinto, Justin M Zook

Nat Commun· January 2025

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A robust benchmark for detecting low-frequency variants in the HG002 Genome In A Bottle NIST reference material.
Camille A Daniels, Adetola Abdulkadir, Megan H Cleveland, Jennifer H McDaniel, David Jáspez, Justin M Zook

bioRxiv· December 2024

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High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation.
Jonas A Gustafson, Sophia B Gibson, Nikhita Damaraju, Miranda P G Zalusky, Kendra Hoekzema, Justin M Zook

Genome Res· November 2024

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Jointly benchmarking small and structural variant calls with vcfdist.
Tim Dunn, Justin M Zook, James M Holt, Satish Narayanasamy

Genome Biol· October 2024

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StratoMod: predicting sequencing and variant calling errors with interpretable machine learning.
Nathan Dwarshuis, Peter Tonner, Nathan D Olson, Fritz J Sedlazeck, Justin Wagner, Justin M Zook

Commun Biol· October 2024

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The GIAB genomic stratifications resource for human reference genomes.
Nathan Dwarshuis, Divya Kalra, Jennifer McDaniel, Philippe Sanio, Pilar Alvarez Jerez, Justin M Zook

Nat Commun· October 2024

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LongTR: genome-wide profiling of genetic variation at tandem repeats from long reads.
Helyaneh Ziaei Jam, Justin M Zook, Sara Javadzadeh, Jonghun Park, Aarushi Sehgal

Genome Biol· July 2024

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Nanopore sequencing of 1000 Genomes Project samples to build a comprehensive catalog of human genetic variation.
Jonas A Gustafson, Sophia B Gibson, Nikhita Damaraju, Miranda Pg Zalusky, Kendra Hoekzema, Justin M Zook

medRxiv· March 2024

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Genome-wide profiling of genetic variation at tandem repeat from long reads.
Helyaneh Ziaei Jam, Justin M Zook, Sara Javadzadeh, Jonghun Park, Aarushi Sehgal

bioRxiv· January 2024

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Benchmarking of small and large variants across tandem repeats.
Adam English, Egor Dolzhenko, Helyaneh Ziaei Jam, Sean Mckenzie, Nathan D Olson, Justin M Zook

bioRxiv· November 2023

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The complete sequence of a human Y chromosome.
Arang Rhie, Sergey Nurk, Monika Cechova, Savannah J Hoyt, Dylan J Taylor, Justin M Zook

Nature· September 2023

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Multiscale analysis of pangenomes enables improved representation of genomic diversity for repetitive and clinically relevant genes.
Chen-Shan Chin, Sairam Behera, Asif Khalak, Fritz J Sedlazeck, Peter H Sudmant, Justin M Zook

Nat Methods· August 2023

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Variant calling and benchmarking in an era of complete human genome sequences.
Nathan D Olson, Justin Wagner, Nathan Dwarshuis, Karen H Miga, Fritz J Sedlazeck, Justin M Zook

Nat Rev Genet· July 2023

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A draft human pangenome reference.
Wen-Wei Liao, Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Justin M Zook

Nature· May 2023

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FixItFelix: improving genomic analysis by fixing reference errors.
Sairam Behera, Jonathon LeFaive, Peter Orchard, Medhat Mahmoud, Luis F Paulin, Justin M Zook

Genome Biol· February 2023

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