Publications by authors named "Katherine Atkins"

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Continuing to be cautious: Japanese contact patterns during the COVID-19 pandemic and their association with public health recommendations.
Tomoka Nakamura, Ryo Kinoshita, Akira Endo, Katherine E Atkins, Hitoshi Oshitani

PLOS Glob Public Health· September 2025

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Correction to "Protecting infants against RSV disease: an impact and cost-effectiveness comparison of long-acting monoclonal antibodies and maternal vaccination" [The Lancet Regional Health - Europe 38 (2024) 100829].
David Hodgson, Neil Wilkins, Edwin van Leeuwen, Conall H Watson, Jonathan Crofts, Katherine E Atkins

Lancet Reg Health Eur· October 2024

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Estimating the risk and spatial spread of measles in populations with high MMR uptake: Using school-household networks to understand the 2013 to 2014 outbreak in the Netherlands.
James D Munday, Katherine E Atkins, Don Klinkenberg, Marc Meurs, Erik Fleur

PLoS Med· October 2024

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Reconciling founder variant multiplicity of HIV-1 infection with the rate of CD4 decline.
James Baxter, Ch Julián Villabona-Arenas, Robin N Thompson, Stéphane Hué, Roland R Regoes, Katherine E Atkins

J R Soc Interface· October 2024

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Protecting infants against RSV disease: an impact and cost-effectiveness comparison of long-acting monoclonal antibodies and maternal vaccination.
David Hodgson, Neil Wilkins, Edwin van Leeuwen, Conall H Watson, Jonathan Crofts, Katherine E Atkins

Lancet Reg Health Eur· March 2024

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Vaccination of Older Adults Against Respiratory Syncytial Virus: The Final Pieces of the Puzzle.
Katherine E Atkins, David Hodgson

Clin Infect Dis· August 2023

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Genomic epidemiology of SARS-CoV-2 variants during the first two years of the pandemic in Colombia.
Cinthy Jimenez-Silva, Ricardo Rivero, Jordan Douglas, Remco Bouckaert, Ch Julian Villabona-Arenas, Katherine E Atkins

Commun Med (Lond)· July 2023

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Inferring the multiplicity of founder variants initiating HIV-1 infection: a systematic review and individual patient data meta-analysis.
James Baxter, Sarah Langhorne, Ting Shi, Damien C Tully, Ch Julián Villabona-Arenas, Katherine E Atkins

Lancet Microbe· February 2023

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Optimal Respiratory Syncytial Virus intervention programmes using Nirsevimab in England and Wales.
David Hodgson, Mihaly Koltai, Fabienne Krauer, Stefan Flasche, Mark Jit, Katherine E Atkins

Vaccine· November 2022

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Simulating respiratory disease transmission within and between classrooms to assess pandemic management strategies at schools.
Akira Endo 遠藤彰, , Mitsuo Uchida 内田満夫, Yang Liu 刘扬, Katherine E Atkins

Proc Natl Acad Sci U S A· September 2022

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Using phylogenetics to infer HIV-1 transmission direction between known transmission pairs.
Christian Julian Villabona-Arenas, Stéphane Hué, James A C Baxter, Matthew Hall, Katrina A Lythgoe, Katherine E Atkins

Proc Natl Acad Sci U S A· September 2022

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Detection of HIV-1 Transmission Clusters from Dried Blood Spots within a Universal Test-and-Treat Trial in East Africa.
Emma Pujol-Hodge, Jesus F Salazar-Gonzalez, Deogratius Ssemwanga, Edwin D Charlebois, James Ayieko, Katherine E Atkins

Viruses· July 2022

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SCoVMod - a spatially explicit mobility and deprivation adjusted model of first wave COVID-19 transmission dynamics.
Christopher J Banks, Ewan Colman, Thomas Doherty, Oliver Tearne, Mark Arnold, Katherine E Atkins

Wellcome Open Res· May 2022

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Characterising within-hospitalSARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves.
Benjamin B Lindsey, Ch Julián Villabona-Arenas, Finlay Campbell, Alexander J Keeley, Matthew D Parker, Katherine E Atkins

Nat Commun· February 2022

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Publisher Correction: Characterising within-hospital SARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves.
Benjamin B Lindsey, Ch Julián Villabona-Arenas, Finlay Campbell, Alexander J Keeley, Matthew D Parker, Katherine E Atkins

Nat Commun· February 2022

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Drug resistance mutations in HIV: new bioinformatics approaches and challenges.
Luc Blassel, Anna Zhukova, Christian J Villabona-Arenas, Katherine E Atkins, Stéphane Hué

Curr Opin Virol· December 2021

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Changing socio-economic and ethnic disparities in influenza/A/H1N1 infection early in the 2009 UK epidemic: a descriptive analysis.
James D Munday, Richard Pebody, Katherine E Atkins, Albert Jan van Hoek

BMC Infect Dis· December 2021

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Within and between classroom transmission patterns of seasonal influenza among primary school students in Matsumoto city, Japan.
Akira Endo, Mitsuo Uchida, Naoki Hayashi, Yang Liu, Katherine E Atkins

Proc Natl Acad Sci U S A· November 2021

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Respiratory syncytial virus seasonality and prevention strategy planning for passive immunisation of infants in low-income and middle-income countries: a modelling study.
You Li, David Hodgson, Xin Wang, Katherine E Atkins, Daniel R Feikin

Lancet Infect Dis· September 2021

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Modeling the effect of vaccination on selection for antibiotic resistance in .
Nicholas G Davies, Stefan Flasche, Mark Jit, Katherine E Atkins

Sci Transl Med· August 2021

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Importance of patient bed pathways and length of stay differences in predicting COVID-19 hospital bed occupancy in England.
Quentin J Leclerc, Naomi M Fuller, Ruth H Keogh, Karla Diaz-Ordaz, Richard Sekula, Katherine E Atkins

BMC Health Serv Res· June 2021

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Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England.
Nicholas G Davies, Sam Abbott, Rosanna C Barnard, Christopher I Jarvis, Adam J Kucharski, Katherine E Atkins

Science· April 2021

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Implications of the school-household network structure on SARS-CoV-2 transmission under school reopening strategies in England.
James D Munday, Katharine Sherratt, Sophie Meakin, Akira Endo, Carl A B Pearson, Katherine E Atkins

Nat Commun· March 2021

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Implication of backward contact tracing in the presence of overdispersed transmission in COVID-19 outbreaks.
Akira Endo, , Quentin J Leclerc, Gwenan M Knight, Graham F Medley, Katherine E Atkins

Wellcome Open Res· March 2021

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Cost-effectiveness of live-attenuated influenza vaccination among school-age children.
Natasha S Wenzel, Katherine E Atkins, Edwin van Leeuwen, M Elizabeth Halloran, Marc Baguelin

Vaccine· January 2021

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