Publications by authors named "Stephane Hue"

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Dengue Infections Among Household Contacts of Symptomatic Index Cases: Implications for Community-Based Intervention Studies.
Erik Koehne, Liesbeth Van Wesenbeeck, Martin L Hibberd, Annemie Buelens, Michiko Toizumi, Stephane Hue

Viruses· June 2025

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Evaluating methods for identifying and quantifying co-colonization using next-generation sequencing data.
Jada Hackman, Martin L Hibberd, Todd D Swarthout, Jason Hinds, James Ashall

Microbiol Spectr· November 2024

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Reconciling founder variant multiplicity of HIV-1 infection with the rate of CD4 decline.
James Baxter, Ch Julián Villabona-Arenas, Robin N Thompson, Stéphane Hué, Roland R Regoes

J R Soc Interface· October 2024

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Could prophylactic antivirals reduce dengue incidence in a high-prevalence endemic area?
Yalda Jafari, Oliver J Brady, Joseph R Biggs, Le Thuy Lien, Huynh Kim Mai

PLoS Negl Trop Dis· July 2024

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Emergence of Novel Norovirus GII.4 Variant.
Preeti Chhabra, Damien C Tully, Janet Mans, Sandra Niendorf, Leslie Barclay

Emerg Infect Dis· January 2024

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Reconstructing the phylodynamic history and geographic spread of the CRF01_AE-predominant HIV-1 epidemic in the Philippines from PR/RT sequences sampled from 2008 to 2018.
Francisco Gerardo M Polotan, Carl Raymund P Salazar, Hannah Leah E Morito, Miguel Francisco B Abulencia, Roslind Anne R Pantoni

Virus Evol· December 2023

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Effectiveness of BNT162b2 and ChAdOx1 against SARS-CoV-2 household transmission: a prospective cohort study in England.
Samuel Clifford, Pauline Waight, Jada Hackman, Stephane Hué, Charlotte M Gower

Wellcome Open Res· November 2023

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Phylogenetic inference of pneumococcal transmission from cross-sectional data, a pilot study.
Jada Hackman, Carmen Sheppard, Jody Phelan, William Jones-Warner, Ben Sobkowiak

Wellcome Open Res· October 2023

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Genomic epidemiology of SARS-CoV-2 infections in The Gambia: an analysis of routinely collected surveillance data between March, 2020, and January, 2022.
Abdoulie Kanteh, Haruna S Jallow, Jarra Manneh, Bakary Sanyang, Mariama A Kujabi

Lancet Glob Health· March 2023

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Quantifying the value of viral genomics when inferring who infected whom in the 2014-16 Ebola virus outbreak in Guinea.
Alexis Robert, Joseph Tsui Lok Hei, Conall H Watson, Pierre-Stéphane Gsell, Yper Hall

Virus Evol· March 2023

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Inferring the multiplicity of founder variants initiating HIV-1 infection: a systematic review and individual patient data meta-analysis.
James Baxter, Sarah Langhorne, Ting Shi, Damien C Tully, Ch Julián Villabona-Arenas

Lancet Microbe· February 2023

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A phylogenetic study of dengue virus in urban Vietnam shows long-term persistence of endemic strains.
James Ashall, Sonal Shah, Joseph R Biggs, Jui-Ning R Chang, Yalda Jafari, Stephane Hue

Virus Evol· February 2023

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Emergence and pandemic spread of small ruminant lentiviruses.
Maria-Luisa Carrozza, Anna-Maria Niewiadomska, Maurizio Mazzei, Mounir R Abi-Said, Stéphane Hué

Virus Evol· January 2023

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Using phylogenetics to infer HIV-1 transmission direction between known transmission pairs.
Christian Julian Villabona-Arenas, Stéphane Hué, James A C Baxter, Matthew Hall, Katrina A Lythgoe

Proc Natl Acad Sci U S A· September 2022

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Combining rapid diagnostic tests to estimate primary and post-primary dengue immune status at the point of care.
Joseph R Biggs, Ava Kristy Sy, James Ashall, Marsha S Santoso, Oliver J Brady, Stephane Hue

PLoS Negl Trop Dis· May 2022

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Characterising within-hospitalSARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves.
Benjamin B Lindsey, Ch Julián Villabona-Arenas, Finlay Campbell, Alexander J Keeley, Matthew D Parker

Nat Commun· February 2022

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Publisher Correction: Characterising within-hospital SARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves.
Benjamin B Lindsey, Ch Julián Villabona-Arenas, Finlay Campbell, Alexander J Keeley, Matthew D Parker

Nat Commun· February 2022

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Drug resistance mutations in HIV: new bioinformatics approaches and challenges.
Luc Blassel, Anna Zhukova, Christian J Villabona-Arenas, Katherine E Atkins, Stéphane Hué

Curr Opin Virol· December 2021

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Case-area targeted interventions (CATI) for reactive dengue control: Modelling effectiveness of vector control and prophylactic drugs in Singapore.
Oliver J Brady, Adam J Kucharski, Sebastian Funk, Yalda Jafari, Marnix Van Loock

PLoS Negl Trop Dis· August 2021

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Using machine learning and big data to explore the drug resistance landscape in HIV.
Luc Blassel, Anna Tostevin, Christian Julian Villabona-Arenas, Martine Peeters, Stéphane Hué

PLoS Comput Biol· August 2021

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Interactions between timing and transmissibility explain diverse flavivirus dynamics in Fiji.
Alasdair D Henderson, Mike Kama, Maite Aubry, Stephane Hue, Anita Teissier

Nat Commun· March 2021

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HIV-2 diversity displays two clades within group A with distinct geographical distribution and evolution.
Benoit Visseaux, Mélanie Bertine, Quentin Le Hingrat, Valentine Ferré, Charlotte Charpentier

Virus Evol· January 2021

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Number of HIV-1 founder variants is determined by the recency of the source partner infection.
Ch Julián Villabona-Arenas, Matthew Hall, Katrina A Lythgoe, Stephen G Gaffney, Roland R Regoes

Science· July 2020

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External Validation of an MRI-Derived Radiomics Model to Predict Biochemical Recurrence after Surgery for High-Risk Prostate Cancer.
Vincent Bourbonne, Georges Fournier, Martin Vallières, François Lucia, Laurent Doucet, Stephane Hue

Cancers (Basel)· March 2020

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Nosocomial transmission of influenza: A retrospective cross-sectional study using next generation sequencing at a hospital in England (2012-2014).
Ruth M Blackburn, Dan Frampton, Catherine M Smith, Ellen B Fragaszy, Simon J Watson

Influenza Other Respir Viruses· November 2019

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