Publications by authors named "Keith D Rivera"

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Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues.
Jennifer G Abelin, Erik J Bergstrom, Keith D Rivera, Hannah B Taylor, Susan Klaeger, Charles Xu, Eva K Verzani, C Jackson White, Hilina B Woldemichael, Maya Virshup

Nat Commun· April 2023

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Identification and Validation of an inhibitor of the protein kinases PIM and DYRK.
Gyula Bencze, Prabhadevi Venkataramani, Elad Elkayam, Keith D Rivera, Ankur Garg

bioRxiv· October 2025

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An integrated proteomic portrait of prostate cancer progression.
Jichang Zhang, Keith D Rivera, Daniela Bossi, Federico Gianfanti, Simone Nicastri

Cell Rep· June 2025

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Automating UbiFast for High-throughput and Multiplexed Ubiquitin Enrichment.
Keith D Rivera, Meagan E Olive, Erik J Bergstrom, Alissa J Nelson, Kimberly A Lee

Mol Cell Proteomics· March 2022

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Profiling SARS-CoV-2 HLA-I peptidome reveals T cell epitopes from out-of-frame ORFs.
Shira Weingarten-Gabbay, Susan Klaeger, Siranush Sarkizova, Leah R Pearlman, Da-Yuan Chen, Keith D Rivera

Cell· July 2021

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Oncogenic KRAS engages an RSK1/NF1 pathway to inhibit wild-type RAS signaling in pancreatic cancer.
Derek K Cheng, Tobiloba E Oni, Jennifer S Thalappillil, Youngkyu Park, Hsiu-Chi Ting, Keith D Rivera

Proc Natl Acad Sci U S A· May 2021

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Identification of protein interactions of grapevine fanleaf virus RNA-dependent RNA polymerase during infection of by affinity purification and tandem mass spectrometry.
Larissa J Osterbaan, Victoria Hoyle, Michelle Curtis, Stacy DeBlasio, Keith D Rivera

J Gen Virol· May 2021

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Author Correction: Mito-oncology agent: fermented extract suppresses the Warburg effect, restores oxidative mitochondrial activity, and inhibits in vivo tumor growth.
Gyula Bencze, Szilvia Bencze, Keith D Rivera, James D Watson, Mate Hidvegi

Sci Rep· January 2021

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SARS-CoV-2 infected cells present HLA-I peptides from canonical and out-of-frame ORFs.
Shira Weingarten-Gabbay, Susan Klaeger, Siranush Sarkizova, Leah R Pearlman, Da-Yuan Chen, Keith D Rivera

bioRxiv· October 2020

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Mito-oncology agent: fermented extract suppresses the Warburg effect, restores oxidative mitochondrial activity, and inhibits in vivo tumor growth.
Gyula Bencze, Szilvia Bencze, Keith D Rivera, James D Watson, Mate Hidvegi

Sci Rep· August 2020

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Tryp-N: A Thermostable Protease for the Production of N-terminal Argininyl and Lysinyl Peptides.
John P Wilson, Jonathan J Ipsaro, Samantha N Del Giudice, Nikita Saha Turna, Carla M Gauss, Keith D Rivera

J Proteome Res· April 2020

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Regulation of PTP1B activation through disruption of redox-complex formation.
Avinash D Londhe, Alexandre Bergeron, Stephanie M Curley, Fuming Zhang, Keith D Rivera

Nat Chem Biol· February 2020

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The glycan CA19-9 promotes pancreatitis and pancreatic cancer in mice.
Dannielle D Engle, Hervé Tiriac, Keith D Rivera, Arnaud Pommier, Sean Whalen

Science· June 2019

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Muller's Ratchet and Ribosome Degeneration in the Obligate Intracellular Parasites .
Sergey V Melnikov, Kasidet Manakongtreecheep, Keith D Rivera, Arthur Makarenko, Darryl J Pappin

Int J Mol Sci· December 2018

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Error-prone protein synthesis in parasites with the smallest eukaryotic genome.
Sergey V Melnikov, Keith D Rivera, Denis Ostapenko, Arthur Makarenko, Neil D Sanscrainte

Proc Natl Acad Sci U S A· July 2018

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Organoid models of human and mouse ductal pancreatic cancer.
Sylvia F Boj, Chang-Il Hwang, Lindsey A Baker, Iok In Christine Chio, Dannielle D Engle, Keith D Rivera

Cell· January 2015

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Dephosphorylation of tyrosine 393 in argonaute 2 by protein tyrosine phosphatase 1B regulates gene silencing in oncogenic RAS-induced senescence.
Ming Yang, Astrid D Haase, Fang-Ke Huang, Gérald Coulis, Keith D Rivera

Mol Cell· September 2014

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Interlaboratory evaluation of automated, multiplexed peptide immunoaffinity enrichment coupled to multiple reaction monitoring mass spectrometry for quantifying proteins in plasma.
Eric Kuhn, Jeffrey R Whiteaker, D R Mani, Angela M Jackson, Lei Zhao, Keith D Rivera

Mol Cell Proteomics· June 2012

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Brainstem deficiency of the 14-3-3 regulator of serotonin synthesis: a proteomics analysis in the sudden infant death syndrome.
Kevin G Broadbelt, Keith D Rivera, David S Paterson, Jhodie R Duncan, Felicia L Trachtenberg

Mol Cell Proteomics· January 2012

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Lack of association of the serotonin transporter polymorphism with the sudden infant death syndrome in the San Diego Dataset.
David S Paterson, Keith D Rivera, Kevin G Broadbelt, Felicia L Trachtenberg, Richard A Belliveau

Pediatr Res· November 2010

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Neuroanatomic relationships between the GABAergic and serotonergic systems in the developing human medulla.
Kevin G Broadbelt, David S Paterson, Keith D Rivera, Felicia L Trachtenberg, Hannah C Kinney

Auton Neurosci· April 2010

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