Publications by authors named "Ken Yagi"

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Isoform analysis of heterozygous putative splicing variants at the allele level using nanopore long-read sequencing.
Kokoro Ozaki, Takashi Irioka, Shohei Noma, Akira Machida, Moe Fukunaga, Ken Yagi

Sci Rep· August 2025

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BCR, not TCR, repertoire diversity is associated with favorable COVID-19 prognosis.
Faith Jessica Paran, Rieko Oyama, Abdullah Khasawneh, Tomohiko Ai, Hendra Saputra Ismanto, Ken Yagi

Front Immunol· November 2024

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Annotation of nuclear lncRNAs based on chromatin interactions.
Saumya Agrawal, Andrey Buyan, Jessica Severin, Masaru Koido, Tanvir Alam, Ken Yagi

PLoS One· May 2024

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Genomic features of renal cell carcinoma developed during end-stage renal disease and dialysis.
Todd A Johnson, Shigekatsu Maekawa, Masashi Fujita, Jisong An, Young-Seok Ju, Ken Yagi

Hum Mol Genet· January 2023

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Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types.
Chi Wai Yip, Chung-Chau Hon, Kayoko Yasuzawa, Divya M Sivaraman, Jordan A Ramilowski, Ken Yagi

Cell Rep· December 2022

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Functional annotation of human long noncoding RNAs via molecular phenotyping.
Jordan A Ramilowski, Chi Wai Yip, Saumya Agrawal, Jen-Chien Chang, Yari Ciani, Ken Yagi

Genome Res· July 2020

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Evolutionary History of GLIS Genes Illuminates Their Roles in Cell Reprograming and Ciliogenesis.
Yuuri Yasuoka, Masahito Matsumoto, Ken Yagi, Yasushi Okazaki

Mol Biol Evol· January 2020

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[Long-term survival of a breast cancer patient with carcinomatous pleuritis and carcinomatous cardiac tamponade successfully treated by multimodality therapy].
Yosuke Tanaka, Kaori Tsuboi, Akira Yamamoto, Shoichi Tsuda, Shigehiro Tsujii, Ken Yagi

Gan To Kagaku Ryoho· April 2015

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Id4, a new candidate gene for senile osteoporosis, acts as a molecular switch promoting osteoblast differentiation.
Yoshimi Tokuzawa, Ken Yagi, Yzumi Yamashita, Yutaka Nakachi, Itoshi Nikaido

PLoS Genet· July 2010

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miR-210 promotes osteoblastic differentiation through inhibition of AcvR1b.
Yosuke Mizuno, Yoshimi Tokuzawa, Yuichi Ninomiya, Ken Yagi, Yukiko Yatsuka-Kanesaki

FEBS Lett· July 2009

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Identification of novel PPARgamma target genes by integrated analysis of ChIP-on-chip and microarray expression data during adipocyte differentiation.
Yutaka Nakachi, Ken Yagi, Itoshi Nikaido, Hidemasa Bono, Mio Tonouchi

Biochem Biophys Res Commun· July 2008

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miR-125b inhibits osteoblastic differentiation by down-regulation of cell proliferation.
Yosuke Mizuno, Ken Yagi, Yoshimi Tokuzawa, Yukiko Kanesaki-Yatsuka, Tatsuo Suda

Biochem Biophys Res Commun· April 2008

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Novel homeodomain-interacting protein kinase family member, HIPK4, phosphorylates human p53 at serine 9.
Shigeki Arai, Akio Matsushita, Kun Du, Ken Yagi, Yasushi Okazaki

FEBS Lett· December 2007

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Estrogen-related receptor alpha modulates the expression of adipogenesis-related genes during adipocyte differentiation.
Nobuhiro Ijichi, Kazuhiro Ikeda, Kuniko Horie-Inoue, Ken Yagi, Yasushi Okazaki

Biochem Biophys Res Commun· July 2007

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[Analysis of gene networks during adipogenesis and osteoblastgenesis focusing on the crosstalk and redundant pathways].
Hidemasa Bono, Ken Yagi, Yutaka Nakachi, Itoshi Nikaido, Yasushi Okazaki

Tanpakushitsu Kakusan Koso· December 2004

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A novel preadipocyte cell line established from mouse adult mature adipocytes.
Ken Yagi, Daisuke Kondo, Yasushi Okazaki, Koichiro Kano

Biochem Biophys Res Commun· September 2004

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c-Ski inhibits the TGF-beta signaling pathway through stabilization of inactive Smad complexes on Smad-binding elements.
Hiroyuki Suzuki, Ken Yagi, Miki Kondo, Mitsuyasu Kato, Kohei Miyazono

Oncogene· June 2004

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Molecular basis of constitutive production of basement membrane components. Gene expression profiles of Engelbreth-Holm-Swarm tumor and F9 embryonal carcinoma cells.
Sugiko Futaki, Yoshitaka Hayashi, Megumi Yamashita, Ken Yagi, Hidemasa Bono

J Biol Chem· December 2003

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Systematic expression profiling of the mouse transcriptome using RIKEN cDNA microarrays.
Hidemasa Bono, Ken Yagi, Takeya Kasukawa, Itoshi Nikaido, Naoko Tominaga

Genome Res· June 2003

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The mouse secretome: functional classification of the proteins secreted into the extracellular environment.
Sean M Grimmond, Kevin C Miranda, Zheng Yuan, Melissa J Davis, David A Hume, Ken Yagi

Genome Res· June 2003

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Continued discovery of transcriptional units expressed in cells of the mouse mononuclear phagocyte lineage.
Christine A Wells, Timothy Ravasi, Razvan Sultana, Ken Yagi, Piero Carninci

Genome Res· June 2003

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Analysis of the mouse transcriptome for genes involved in the function of the nervous system.
Stefano Gustincich, Serge Batalov, Kirk W Beisel, Hidemasa Bono, Piero Carninci, Ken Yagi

Genome Res· June 2003

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Lymphoid enhancer factor 1 makes cells resistant to transforming growth factor beta-induced repression of c-myc.
Toru Sasaki, Hiroyuki Suzuki, Ken Yagi, Masao Furuhashi, Ryoji Yao

Cancer Res· February 2003

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c-myc is a downstream target of the Smad pathway.
Ken Yagi, Masao Furuhashi, Hiromasa Aoki, Daisuke Goto, Hiroyuki Kuwano

J Biol Chem· January 2002

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