Publications by authors named "Kieran Smallbone"

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Bicarbonate-rich fluid secretion predicted by a computational model of guinea-pig pancreatic duct epithelium.
Makoto Yamaguchi, Martin C Steward, Kieran Smallbone, Yoshiro Sohma, Akiko Yamamoto

J Physiol· March 2017

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Metabolic regulation is sufficient for global and robust coordination of glucose uptake, catabolism, energy production and growth in Escherichia coli.
Pierre Millard, Kieran Smallbone, Pedro Mendes

PLoS Comput Biol· February 2017

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Toward Community Standards and Software for Whole-Cell Modeling.
Dagmar Waltemath, Jonathan R Karr, Frank T Bergmann, Vijayalakshmi Chelliah, Michael Hucka, Kieran Smallbone

IEEE Trans Biomed Eng· October 2016

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Recon 2.2: from reconstruction to model of human metabolism.
Neil Swainston, Kieran Smallbone, Hooman Hefzi, Paul D Dobson, Judy Brewer

Metabolomics· June 2016

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A robust and efficient method for estimating enzyme complex abundance and metabolic flux from expression data.
Brandon E Barker, Narayanan Sadagopan, Yiping Wang, Kieran Smallbone, Christopher R Myers

Comput Biol Chem· December 2015

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BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology.
Alejandro F Villaverde, David Henriques, Kieran Smallbone, Sophia Bongard, Joachim Schmid

BMC Syst Biol· February 2015

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Playing off the curve - testing quantitative predictions of skill acquisition theories in development of chess performance.
Robert Gaschler, Johanna Progscha, Kieran Smallbone, Nilam Ram, Merim Bilalić

Front Psychol· September 2014

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Systematic construction of kinetic models from genome-scale metabolic networks.
Natalie J Stanford, Timo Lubitz, Kieran Smallbone, Edda Klipp, Pedro Mendes

PLoS One· July 2014

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A mathematical model of the colon crypt capturing compositional dynamic interactions between cell types.
Kieran Smallbone, Bernard M Corfe

Int J Exp Pathol· February 2014

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Version 6 of the consensus yeast metabolic network refines biochemical coverage and improves model performance.
Benjamin D Heavner, Kieran Smallbone, Nathan D Price, Larry P Walker

Database (Oxford)· October 2013

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A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes.
Kieran Smallbone, Hanan L Messiha, Kathleen M Carroll, Catherine L Winder, Naglis Malys

FEBS Lett· September 2013

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Kinetic modeling of metabolic pathways: application to serine biosynthesis.
Kieran Smallbone, Natalie J Stanford

Methods Mol Biol· July 2013

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A community-driven global reconstruction of human metabolism.
Ines Thiele, Neil Swainston, Ronan M T Fleming, Andreas Hoppe, Swagatika Sahoo, Kieran Smallbone

Nat Biotechnol· May 2013

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Mechanistic modelling of cancer: some reflections from software engineering and philosophy of science.
José M Cañete-Valdeón, Roel Wieringa, Kieran Smallbone

Naturwissenschaften· December 2012

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Yeast 5 - an expanded reconstruction of the Saccharomyces cerevisiae metabolic network.
Benjamin D Heavner, Kieran Smallbone, Brandon Barker, Pedro Mendes, Larry P Walker

BMC Syst Biol· June 2012

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Improving metabolic flux predictions using absolute gene expression data.
Dave Lee, Kieran Smallbone, Warwick B Dunn, Ettore Murabito, Catherine L Winder

BMC Syst Biol· June 2012

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Modelling acidosis and the cell cycle in multicellular tumour spheroids.
Marcus J Tindall, Louise Dyson, Kieran Smallbone, Philip K Maini

J Theor Biol· April 2012

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Characterisation of multiple substrate-specific (d)ITP/(d)XTPase and modelling of deaminated purine nucleotide metabolism.
Oluwafemi Davies, Pedro Mendes, Kieran Smallbone, Naglis Malys

BMB Rep· April 2012

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Building a kinetic model of trehalose biosynthesis in Saccharomyces cerevisiae.
Kieran Smallbone, Naglis Malys, Hanan L Messiha, Jill A Wishart, Evangelos Simeonidis

Methods Enzymol· January 2012

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The SuBliMinaL Toolbox: automating steps in the reconstruction of metabolic networks.
Neil Swainston, Kieran Smallbone, Pedro Mendes, Douglas Kell, Norman Paton

J Integr Bioinform· November 2011

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A probabilistic approach to identify putative drug targets in biochemical networks.
Ettore Murabito, Kieran Smallbone, Jonathan Swinton, Hans V Westerhoff, Ralf Steuer

J R Soc Interface· June 2011

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Why does yeast ferment? A flux balance analysis study.
Evangelos Simeonidis, Ettore Murabito, Kieran Smallbone, Hans V Westerhoff

Biochem Soc Trans· October 2010

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Further developments towards a genome-scale metabolic model of yeast.
Paul D Dobson, Kieran Smallbone, Daniel Jameson, Evangelos Simeonidis, Karin Lanthaler

BMC Syst Biol· October 2010

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Enzyme kinetics informatics: from instrument to browser.
Neil Swainston, Martin Golebiewski, Hanan L Messiha, Naglis Malys, Renate Kania, Kieran Smallbone

FEBS J· September 2010

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Episodic, transient systemic acidosis delays evolution of the malignant phenotype: Possible mechanism for cancer prevention by increased physical activity.
Kieran Smallbone, Philip K Maini, Robert A Gatenby

Biol Direct· April 2010

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