Publications by authors named "Konrad Scheffler"

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Timing the SARS-CoV-2 index case in Hubei province.
Jonathan Pekar, Michael Worobey, Niema Moshiri, Konrad Scheffler, Joel O Wertheim

April 2021

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Correction: Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair.
Jennifer H McDaniel, Vaidehi Patel, Nathan D Olson, Hua-Jun He, Zhiyong He, Konrad Scheffler

Sci Data· August 2025

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Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair.
Jennifer H McDaniel, Vaidehi Patel, Nathan D Olson, Hua-Jun He, Zhiyong He, Konrad Scheffler

Sci Data· July 2025

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Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair.
Jennifer H McDaniel, Vaidehi Patel, Nathan D Olson, Hua-Jun He, Zhiyong He, Konrad Scheffler

bioRxiv· June 2025

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Characterization of the clinically approved MRI tracer resotran for magnetic particle imaging in a comparison study.
Fabian Mohn, Konrad Scheffler, Justin Ackers, Agnes Weimer, Franz Wegner

Phys Med Biol· July 2024

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Solving the MPI reconstruction problem with automatically tuned regularization parameters.
Konrad Scheffler, Marija Boberg, Tobias Knopp

Phys Med Biol· February 2024

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Optimization of magnetic nanoparticles for engineering erythrocytes as theranostic agents.
Laura Maria Slavu, Antonella Antonelli, Emanuele Salvatore Scarpa, Pasant Abdalla, Claire Wilhelm, Konrad Scheffler

Biomater Sci· May 2023

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Extrapolation of System Matrices in Magnetic Particle Imaging.
Konrad Scheffler, Marija Boberg, Tobias Knopp

IEEE Trans Med Imaging· April 2023

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REViewer: haplotype-resolved visualization of read alignments in and around tandem repeats.
Egor Dolzhenko, Ben Weisburd, Kristina Ibañez, Indhu-Shree Rajan-Babu, Christine Anyansi, Konrad Scheffler

Genome Med· August 2022

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Particle interactions and their effect on magnetic particle spectroscopy and imaging.
Lorena Moor, Subas Scheibler, Lukas Gerken, Konrad Scheffler, Florian Thieben

Nanoscale· May 2022

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Timing the SARS-CoV-2 Index Case in Hubei Province.
Jonathan Pekar, Michael Worobey, Niema Moshiri, Konrad Scheffler, Joel O Wertheim

bioRxiv· November 2020

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ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions.
Egor Dolzhenko, Viraj Deshpande, Felix Schlesinger, Peter Krusche, Roman Petrovski, Konrad Scheffler

Bioinformatics· November 2019

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Strelka2: fast and accurate calling of germline and somatic variants.
Sangtae Kim, Konrad Scheffler, Aaron L Halpern, Mitchell A Bekritsky, Eunho Noh

Nat Methods· August 2018

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A molecular transmission network of recent hepatitis C infection in people with and without HIV: Implications for targeted treatment strategies.
Sofia R Bartlett, Joel O Wertheim, Rowena A Bull, Gail V Matthews, Francois Mj Lamoury, Konrad Scheffler

J Viral Hepat· May 2017

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Social and Genetic Networks of HIV-1 Transmission in New York City.
Joel O Wertheim, Sergei L Kosakovsky Pond, Lisa A Forgione, Sanjay R Mehta, Ben Murrell, Konrad Scheffler

PLoS Pathog· January 2017

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Standard vaccines increase HIV-1 transcription during antiretroviral therapy.
Christina Yek, Sara Gianella, Montserrat Plana, Pedro Castro, Konrad Scheffler

AIDS· September 2016

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Using HIV Sequence and Epidemiologic Data to Assess the Effect of Self-referral Testing for Acute HIV Infection on Incident Diagnoses in San Diego, California.
Sanjay R Mehta, Ben Murrell, Christy M Anderson, Sergei L Kosakovsky Pond, Joel O Wertheim, Konrad Scheffler

Clin Infect Dis· July 2016

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Compartmentalized HIV rebound in the central nervous system after interruption of antiretroviral therapy.
Sara Gianella, Sergei L Kosakovsky Pond, Michelli F Oliveira, Konrad Scheffler, Matt C Strain

Virus Evol· July 2016

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Comparative Analysis of Cell-Associated HIV DNA Levels in Cerebrospinal Fluid and Peripheral Blood by Droplet Digital PCR.
Michelli Faria de Oliveira, Sara Gianella, Scott Letendre, Konrad Scheffler, Sergei L Kosakovsky Pond

PLoS One· June 2016

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Seminal Shedding of CMV and HIV Transmission among Men Who Have Sex with Men.
Sara Gianella, Konrad Scheffler, Sanjay R Mehta, Susan J Little, Lorri Freitas

Int J Environ Res Public Health· July 2015

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Less is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selection.
Martin D Smith, Joel O Wertheim, Steven Weaver, Ben Murrell, Konrad Scheffler

Mol Biol Evol· May 2015

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Gene-wide identification of episodic selection.
Ben Murrell, Steven Weaver, Martin D Smith, Joel O Wertheim, Sasha Murrell, Konrad Scheffler

Mol Biol Evol· May 2015

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RELAX: detecting relaxed selection in a phylogenetic framework.
Joel O Wertheim, Ben Murrell, Martin D Smith, Sergei L Kosakovsky Pond, Konrad Scheffler

Mol Biol Evol· March 2015

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Comprehensive sieve analysis of breakthrough HIV-1 sequences in the RV144 vaccine efficacy trial.
Paul T Edlefsen, Morgane Rolland, Tomer Hertz, Sodsai Tovanabutra, Andrew J Gartland, Konrad Scheffler

PLoS Comput Biol· February 2015

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IDEPI: rapid prediction of HIV-1 antibody epitopes and other phenotypic features from sequence data using a flexible machine learning platform.
N Lance Hepler, Konrad Scheffler, Steven Weaver, Ben Murrell, Douglas D Richman

PLoS Comput Biol· September 2014

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