Publications by authors named "Kristof Engelen"

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A COMPASS for VESPUCCI: A FAIR Way to Explore the Grapevine Transcriptomic Landscape.
Marco Moretto, Paolo Sonego, Stefania Pilati, José Tomás Matus, Laura Costantini, Kristof Engelen

Front Plant Sci· February 2022

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PulmonDB: a curated lung disease gene expression database.
Ana B Villaseñor-Altamirano, Marco Moretto, Mariel Maldonado, Alejandra Zayas-Del Moral, Adrián Munguía-Reyes, Kristof Engelen

Sci Rep· January 2020

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Dual Transcriptome and Metabolic Analysis of cv. Pinot Noir Berry and During Quiescence and Egressed Infection.
Zeraye Mehari Haile, Giulia Malacarne, Stefania Pilati, Paolo Sonego, Marco Moretto, Kristof Engelen

Front Plant Sci· January 2020

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Transcriptome Profiles of Strawberry () Fruit Interacting With at Different Ripening Stages.
Zeraye Mehari Haile, Ellaine Grace Nagpala-De Guzman, Marco Moretto, Paolo Sonego, Kristof Engelen

Front Plant Sci· September 2019

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First step toward gene expression data integration: transcriptomic data acquisition with COMMAND>_.
Marco Moretto, Paolo Sonego, Ana B Villaseñor-Altamirano, Kristof Engelen

BMC Bioinformatics· January 2019

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Time-Course Transcriptome Analysis of Arabidopsis Siliques Discloses Genes Essential for Fruit Development and Maturation.
Chiara Mizzotti, Lisa Rotasperti, Marco Moretto, Luca Tadini, Francesca Resentini, Kristof Engelen

Plant Physiol· November 2018

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The genome sequence and transcriptome of Potentilla micrantha and their comparison to Fragaria vesca (the woodland strawberry).
Matteo Buti, Marco Moretto, Elena Barghini, Flavia Mascagni, Lucia Natali, Kristof Engelen

Gigascience· April 2018

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Dual RNA-Seq of Lysobacter capsici AZ78 - Phytophthora infestans interaction shows the implementation of attack strategies by the bacterium and unsuccessful oomycete defense responses.
Selena Tomada, Paolo Sonego, Marco Moretto, Kristof Engelen, Ilaria Pertot

Environ Microbiol· October 2017

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Molecular analysis of the early interaction between the grapevine flower and Botrytis cinerea reveals that prompt activation of specific host pathways leads to fungus quiescence.
Zeraye Mehari Haile, Stefania Pilati, Paolo Sonego, Giulia Malacarne, Urska Vrhovsek, Kristof Engelen

Plant Cell Environ· August 2017

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Abscisic Acid Is a Major Regulator of Grape Berry Ripening Onset: New Insights into ABA Signaling Network.
Stefania Pilati, Giorgia Bagagli, Paolo Sonego, Marco Moretto, Daniele Brazzale, Kristof Engelen

Front Plant Sci· June 2017

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Insights into the Role of the Berry-Specific Ethylene Responsive Factor .
Carmen Leida, Antonio Dal Rì, Lorenza Dalla Costa, Maria D Gómez, Valerio Pompili, Kristof Engelen

Front Plant Sci· December 2016

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Complete genome sequence of Bacillus amyloliquefaciens subsp. plantarum S499, a rhizobacterium that triggers plant defences and inhibits fungal phytopathogens.
Giulia Molinatto, Gerardo Puopolo, Paolo Sonego, Marco Moretto, Kristof Engelen

J Biotechnol· November 2016

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Practical Approaches for Mining Frequent Patterns in Molecular Datasets.
Stefan Naulaerts, Sandy Moens, Kristof Engelen, Wim Vanden Berghe, Bart Goethals

Bioinform Biol Insights· May 2016

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The grapevine VvibZIPC22 transcription factor is involved in the regulation of flavonoid biosynthesis.
Giulia Malacarne, Emanuela Coller, Stefan Czemmel, Urska Vrhovsek, Kristof Engelen

J Exp Bot· May 2016

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VESPUCCI: Exploring Patterns of Gene Expression in Grapevine.
Marco Moretto, Paolo Sonego, Stefania Pilati, Giulia Malacarne, Laura Costantini, Kristof Engelen

Front Plant Sci· May 2016

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The Lysobacter capsici AZ78 Genome Has a Gene Pool Enabling it to Interact Successfully with Phytopathogenic Microorganisms and Environmental Factors.
Gerardo Puopolo, Selena Tomada, Paolo Sonego, Marco Moretto, Kristof Engelen

Front Microbiol· February 2016

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COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses.
Marco Moretto, Paolo Sonego, Nicolas Dierckxsens, Matteo Brilli, Luca Bianco, Kristof Engelen

Nucleic Acids Res· January 2016

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Evolution of Intra-specific Regulatory Networks in a Multipartite Bacterial Genome.
Marco Galardini, Matteo Brilli, Giulia Spini, Matteo Rossi, Bianca Roncaglia, Kristof Engelen

PLoS Comput Biol· September 2015

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Comparative analysis of gene expression: uncovering expression conservation and divergence between Salmonella enterica serovar Typhimurium strains LT2 and 14028S.
Paolo Sonego, Pieter Meysman, Marco Moretto, Roberto Viola, Kris Laukens, Kristof Engelen

Methods Mol Biol· June 2015

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Whole-genome comparative analysis of virulence genes unveils similarities and differences between endophytes and other symbiotic bacteria.
Sebastiàn Lòpez-Fernàndez, Paolo Sonego, Marco Moretto, Michael Pancher, Kristof Engelen

Front Microbiol· June 2015

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Structural properties of prokaryotic promoter regions correlate with functional features.
Pieter Meysman, Julio Collado-Vides, Enrique Morett, Roberto Viola, Kristof Engelen

PLoS One· May 2015

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MAGIC: access portal to a cross-platform gene expression compendium for maize.
Qiang Fu, Ana Carolina Fierro, Pieter Meysman, Aminael Sanchez-Rodriguez, Klaas Vandepoele, Kristof Engelen

Bioinformatics· May 2014

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Draft Genome Sequence of Lysobacter capsici AZ78, a Bacterium Antagonistic to Plant-Pathogenic Oomycetes.
Gerardo Puopolo, Paolo Sonego, Kristof Engelen, Ilaria Pertot

Genome Announc· April 2014

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Phenotypical and molecular responses of Arabidopsis thaliana roots as a result of inoculation with the auxin-producing bacterium Azospirillum brasilense.
Stijn Spaepen, Stijn Bossuyt, Kristof Engelen, Kathleen Marchal, Jos Vanderleyden

New Phytol· February 2014

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Canonical and non-canonical EcfG sigma factors control the general stress response in Rhizobium etli.
Ann Jans, Maarten Vercruysse, Shanjun Gao, Kristof Engelen, Ivo Lambrichts

Microbiologyopen· December 2013

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