Publications by authors named "Kuo Ping Chiu"

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Genome sequencing and application of Taiwanese macaque Macaca cyclopis.
Kuo-Ping Chiu, Lutimba Stuart, Hong Sain Ooi, John Yu, David Glenn Smith

Sci Rep· July 2023

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Transcriptome-level assessment of the impact of deformed wing virus on honey bee larvae.
Zih-Ting Chang, Yu-Feng Huang, Yue-Wen Chen, Ming-Ren Yen, Po-Ya Hsu, Kuo-Ping Chiu

Sci Rep· July 2021

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Comparison of gut microbiota of healthy and diseased walking sticks, Phasmotaenia lanyuhensis.
Yi-Hsuan Li, Yu-Feng Huang, Tzu-Han Chen, Shin-Shan Wu, Hsin-Chieh Tang, Kuo-Ping Chiu

Arch Insect Biochem Physiol· December 2020

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Comprehensive Cohort Analysis of Mutational Spectrum in Early Onset Breast Cancer Patients.
Mohit K Midha, Yu-Feng Huang, Hsiao-Hsiang Yang, Tan-Chi Fan, Nai-Chuan Chang, Kuo-Ping Chiu

Cancers (Basel)· July 2020

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Long-read sequencing in deciphering human genetics to a greater depth.
Mohit K Midha, Mengchu Wu, Kuo-Ping Chiu

Hum Genet· December 2019

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Application of cell-free DNA sequencing in characterization of bloodborne microbes and the study of microbe-disease interactions.
Kuo-Ping Chiu, Alice L Yu

PeerJ· August 2019

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Genomic sequencing of Troides aeacus nucleopolyhedrovirus (TraeNPV) from golden birdwing larvae (Troides aeacus formosanus) to reveal defective Autographa californica NPV genomic features.
Yu-Feng Huang, Tzu-Han Chen, Zih-Ting Chang, Tai-Chuan Wang, Se Jin Lee, Kuo-Ping Chiu

BMC Genomics· May 2019

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Single cell transcriptome analysis of MCF-7 reveals consistently and inconsistently expressed gene groups each associated with distinct cellular localization and functions.
Yih-Shien Chiang, Yu-Feng Huang, Mohit K Midha, Tzu-Han Chen, Hsin-Chieh Shiau, Kuo-Ping Chiu

PLoS One· April 2019

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Analysis of microbial sequences in plasma cell-free DNA for early-onset breast cancer patients and healthy females.
Yu-Feng Huang, Yen-Ju Chen, Tan-Chi Fan, Nai-Chuan Chang, Yi-Jie Chen, Kuo-Ping Chiu

BMC Med Genomics· February 2018

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T Oligo-Primed Polymerase Chain Reaction (TOP-PCR): A Robust Method for the Amplification of Minute DNA Fragments in Body Fluids.
Yu-Shin Nai, Tzu-Han Chen, Yu-Feng Huang, Mohit K Midha, Hsin-Chieh Shiau, Kuo Ping Chiu

Sci Rep· January 2017

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Complete Taiwanese Macaque (Macaca cyclopis) Mitochondrial Genome: Reference-Assisted de novo Assembly with Multiple k-mer Strategy.
Yu-Feng Huang, Mohit Midha, Tzu-Han Chen, Yu-Tai Wang, David Glenn Smith, Kuo Ping Chiu

PLoS One· April 2016

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Predominant structural configuration of natural antibody repertoires enables potent antibody responses against protein antigens.
Hong-Sen Chen, Shin-Chen Hou, Jhih-Wei Jian, King-Siang Goh, San-Tai Shen, Kuo Ping Chiu

Sci Rep· July 2015

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Global assessment of Antrodia cinnamomea-induced microRNA alterations in hepatocarcinoma cells.
Yen-Ju Chen, Mike W C Thang, Yu-Tzu Chan, Yu-Feng Huang, Nianhan Ma, Kuo Ping Chiu

PLoS One· October 2014

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Antibody variable domain interface and framework sequence requirements for stability and function by high-throughput experiments.
Hung-Ju Hsu, Kuo Hao Lee, Jhih-Wei Jian, Hung-Ju Chang, Chung-Ming Yu, Kuo Ping Chiu

Structure· January 2014

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Loop-sequence features and stability determinants in antibody variable domains by high-throughput experiments.
Hung-Ju Chang, Jhih-Wei Jian, Hung-Ju Hsu, Yu-Ching Lee, Hong-Sen Chen, Kuo-Ping Chiu

Structure· January 2014

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Concordant and discordant regulation of target genes by miR-31 and its isoforms.
Yu-Tzu Chan, You-Chin Lin, Ruey-Jen Lin, Huan-Hsien Kuo, Wai-Cheng Thang, Kuo-Ping Chiu

PLoS One· December 2013

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Palindromic sequence impedes sequencing-by-ligation mechanism.
Yu-Feng Huang, Sheng-Chung Chen, Yih-Shien Chiang, Tzu-Han Chen, Kuo-Ping Chiu

BMC Syst Biol· June 2013

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De-novo identification of PPARgamma/RXR binding sites and direct targets during adipogenesis.
Mohamed Sabry Hamza, Sebastian Pott, Vinsensius B Vega, Jane S Thomsen, Gopalan Srinivasan Kandhadayar, Kuo Ping Chiu

PLoS One· April 2009

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The use of multiple displacement amplification to amplify complex DNA libraries.
Melissa J Fullwood, Jack J S Tan, Patrick W P Ng, Kuo Ping Chiu, Jun Liu

Nucleic Acids Res· March 2008

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Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells.
Xiao Dong Zhao, Xu Han, Joon Lin Chew, Jun Liu, Kuo Ping Chiu

Cell Stem Cell· September 2007

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Genome-wide mapping of RELA(p65) binding identifies E2F1 as a transcriptional activator recruited by NF-kappaB upon TLR4 activation.
Ching-Aeng Lim, Fei Yao, Joyce Jing-Yi Wong, Joshy George, Han Xu, Kuo Ping Chiu

Mol Cell· August 2007

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Whole-genome cartography of estrogen receptor alpha binding sites.
Chin-Yo Lin, Vinsensius B Vega, Jane S Thomsen, Tao Zhang, Say Li Kong, Kuo Ping Chiu

PLoS Genet· June 2007

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Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs).
Yijun Ruan, Hong Sain Ooi, Siew Woh Choo, Kuo Ping Chiu, Xiao Dong Zhao

Genome Res· June 2007

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

Nature· June 2007

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Pathway aberrations of murine melanoma cells observed in Paired-End diTag transcriptomes.
Kuo Ping Chiu, Pramila Ariyaratne, Han Xu, Adrian Tan, Patrick Ng

BMC Cancer· June 2007

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