Publications by authors named "Kutlu O Ulgen"

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Community Modeling Reveals Disrupted Gut Microbial Secretion in Autism Associated With Redox and Neurometabolic Alterations.
Elif Esvap, Kutlu O Ulgen

Biotechnol J· December 2025

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Predictive Modeling of Pharmacokinetic Drug-Drug and Herb-Drug Interactions in Oncology: Insights From PBPK Studies.
Enes Emre Taş, Kutlu O Ulgen

Int J Toxicol· September 2025

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Exploring the Integrated Gut-Brain Metabolic Model for ADHD.
Ezgi Tas, Kutlu O Ulgen

Biochem Genet· August 2025

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Alterations in Gut Microbiota-Brain Axis in Major Depressive Disorder as Identified by Machine Learning.
Atacan Deniz Oncu, Arzucan Ozgur, Kutlu O Ulgen

OMICS· July 2025

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Exploring the role of gut microbiota in rheumatoid arthritis: the effects of diet and drug supplementation.
Destina Ekingen Genc, Ozlem Ozbek, Kutlu O Ulgen

BMC Rheumatol· July 2025

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Genome-Scale Metabolic Modeling of Human Pancreas with Focus on Type 2 Diabetes.
Mustafa Sertbas, Kutlu O Ulgen

OMICS· April 2025

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Exploring Human Brain Metabolism via Genome-Scale Metabolic Modeling with Highlights on Multiple Sclerosis.
Mustafa Sertbas, Kutlu O Ulgen

ACS Chem Neurosci· April 2025

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Advances in Physiologically Based Pharmacokinetic (PBPK) Modeling of Nanomaterials.
Ozlem Ozbek, Destina Ekingen Genc, Kutlu O Ulgen

ACS Pharmacol Transl Sci· August 2024

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Applications of 3D Bioprinting Technology to Brain Cells and Brain Tumor Models: Special Emphasis to Glioblastoma.
Ilkay Irem Ozbek, Hale Saybasili, Kutlu O Ulgen

ACS Biomater Sci Eng· May 2024

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Uncovering the Effect of SARS-CoV-2 on Liver Metabolism via Genome-Scale Metabolic Modeling for Reprogramming and Therapeutic Strategies.
Mustafa Sertbas, Kutlu O Ulgen

ACS Omega· April 2024

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Exploring data-driven chemical SMILES tokenization approaches to identify key protein-ligand binding moieties.
Asu Busra Temizer, Gökçe Uludoğan, Rıza Özçelik, Taha Koulani, Elif Ozkirimli, Kutlu O Ulgen

Mol Inform· March 2024

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Circadian clock crosstalks with autism.
Ekin Yurdakul, Yaman Barlas, Kutlu O Ulgen

Brain Behav· December 2023

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Understanding the ADHD-Gut Axis by Metabolic Network Analysis.
Ezgi Taş, Kutlu O Ülgen

Metabolites· April 2023

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Neuroinflammation, Energy and Sphingolipid Metabolism Biomarkers Are Revealed by Metabolic Modeling of Autistic Brains.
Elif Esvap, Kutlu O Ulgen

Biomedicines· February 2023

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Identification of Therapeutic Targets for Medulloblastoma by Tissue-Specific Genome-Scale Metabolic Model.
Ilkay Irem Ozbek, Kutlu O Ulgen

Molecules· January 2023

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Comprehensive genome-scale metabolic model of the human pathogen : A platform for understanding pathogen metabolism and identifying new drug targets.
Enes Fahri Tezcan, Yigit Demirtas, Zeynep Petek Cakar, Kutlu O Ulgen

Front Bioinform· January 2023

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Exploiting pretrained biochemical language models for targeted drug design.
Gökçe Uludoğan, Elif Ozkirimli, Kutlu O Ulgen, Nilgün Karalı, Arzucan Özgür

Bioinformatics· September 2022

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Understanding the adaptive laboratory evolution of multiple stress-resistant yeast strains by genome-scale modeling.
Handan Çetin, Zeynep Petek Çakar, Kutlu O Ülgen

Yeast· August 2022

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Understanding the Link between Inflammasome and Apoptosis through the Response of THP-1 Cells against Drugs Using Droplet-Based Microfluidics.
Elif Gencturk, Muge Kasim, Berna Morova, Alper Kiraz, Kutlu O Ulgen

ACS Omega· May 2022

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Fabrication Protocol for Thermoplastic Microfluidic Devices: Nanoliter Volume Bioreactors for Cell Culturing.
Elif Gencturk, Senol Mutlu, Kutlu O Ulgen

Methods Mol Biol· March 2022

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Real-Time Single-Cell Monitoring of Drug Effects Using Droplet-Based Microfluidic Technology: A Proof-of-Concept Study.
Muge Kasim, Elif Gencturk, Kutlu O Ulgen

OMICS· October 2021

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Advances in Genome-Scale Metabolic Modeling toward Microbial Community Analysis of the Human Microbiome.
Elif Esvap, Kutlu O Ulgen

ACS Synth Biol· September 2021

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The Toxicity of Polystyrene-Based Nanoparticles in Is Associated with Nanoparticle Charge and Uptake Mechanism.
Ozlem Ozbek, Kutlu O Ulgen, Nazar Ileri Ercan

Chem Res Toxicol· April 2021

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Genome-Scale Metabolic Modeling for Unraveling Molecular Mechanisms of High Threat Pathogens.
Mustafa Sertbas, Kutlu O Ulgen

Front Cell Dev Biol· November 2020

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Thermoplastic microfluidic bioreactors with integrated electrodes to study tumor treating fields on yeast cells.
Elif Gencturk, Kutlu O Ulgen, Senol Mutlu

Biomicrofluidics· May 2020

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