Publications by authors named "Kyle Medley"

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Kinked Again! From Congenital Brachial Plexus Palsy to Adult Neurogenic Thoracic Outlet Syndrome: A Case Report.
Sandra L Hearn, Kyle Medley, Eric A Liao

Am J Phys Med Rehabil· January 2025

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Metabolic reprogramming underlies cavefish muscular endurance despite loss of muscle mass and contractility.
Luke Olsen, Michaella Levy, J Kyle Medley, Huzaifa Hassan, Brandon Miller

Proc Natl Acad Sci U S A· January 2023

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BioSimulators: a central registry of simulation engines and services for recommending specific tools.
Bilal Shaikh, Lucian P Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, J Kyle Medley

Nucleic Acids Res· July 2022

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The metabolome of Mexican cavefish shows a convergent signature highlighting sugar, antioxidant, and Ageing-Related metabolites.
J Kyle Medley, Jenna Persons, Tathagata Biswas, Luke Olsen, Robert Peuß

Elife· June 2022

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Enhanced lipogenesis through Pparγ helps cavefish adapt to food scarcity.
Shaolei Xiong, Wei Wang, Alexander Kenzior, Luke Olsen, Jaya Krishnan, Kyle Medley

Curr Biol· May 2022

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A compiler for biological networks on silicon chips.
J Kyle Medley, Jonathan Teo, Sung Sik Woo, Joseph Hellerstein, Rahul Sarpeshkar

PLoS Comput Biol· September 2020

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libsbmljs-Enabling web-based SBML tools.
J Kyle Medley, Joseph Hellerstein, Herbert M Sauro

Biosystems· July 2020

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Tellurium: An extensible python-based modeling environment for systems and synthetic biology.
Kiri Choi, J Kyle Medley, Matthias König, Kaylene Stocking, Lucian Smith

Biosystems· September 2018

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Fluorescence alteration of MPA capped CdSe quantum dots by spontaneous biomarker protein adsorption.
Amber Rowley, Tegan Parks, Kaden Parks, Kyle Medley, Alex Cordner

Anal Biochem· August 2018

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A portable structural analysis library for reaction networks.
Yosef Bedaso, Frank T Bergmann, Kiri Choi, Kyle Medley, Herbert M Sauro

Biosystems· July 2018

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Tellurium notebooks-An environment for reproducible dynamical modeling in systems biology.
J Kyle Medley, Kiri Choi, Matthias König, Lucian Smith, Stanley Gu

PLoS Comput Biol· June 2018

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Synthetic Biology: Engineering Living Systems from Biophysical Principles.
Bryan A Bartley, Kyung Kim, J Kyle Medley, Herbert M Sauro

Biophys J· March 2017

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phraSED-ML: A paraphrased, human-readable adaptation of SED-ML.
Kiri Choi, Lucian P Smith, J Kyle Medley, Herbert M Sauro

J Bioinform Comput Biol· December 2016

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Toward Community Standards and Software for Whole-Cell Modeling.
Dagmar Waltemath, Jonathan R Karr, Frank T Bergmann, Vijayalakshmi Chelliah, Michael Hucka, J Kyle Medley

IEEE Trans Biomed Eng· October 2016

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Guidelines for Reproducibly Building and Simulating Systems Biology Models.
J Kyle Medley, Arthur P Goldberg, Jonathan R Karr

IEEE Trans Biomed Eng· October 2016

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Editorial Reproducibility of Computational Models.
Herbert M Sauro, Kiri Choi, Kyle Medley, Lucian Smith

IEEE Trans Biomed Eng· October 2016

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libRoadRunner: a high performance SBML simulation and analysis library.
Endre T Somogyi, Jean-Marie Bouteiller, James A Glazier, Matthias König, J Kyle Medley

Bioinformatics· October 2015

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