Publications by authors named "Lada Biedermannova"

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DNATCO v5.0: integrated web platform for 3D nucleic acid structure analysis.
Jiří Černý, Michal Malý, Paulína Božíková, Terezie Prchalová, Jakub Svoboda

Nucleic Acids Res· January 2026

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A conserved tryptophan in the acylated segment of RTX toxins controls their β integrin-independent cell penetration.
Adriana Osickova, Sarka Knoblochova, Ladislav Bumba, Petr Man, Zuzana Kalaninova, Lada Biedermannova

J Biol Chem· August 2023

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Knowledge-based prediction of DNA hydration using hydrated dinucleotides as building blocks.
Lada Biedermannová, Jiří Černý, Michal Malý, Michaela Nekardová, Bohdan Schneider

Acta Crystallogr D Struct Biol· August 2022

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Flavonolignans from silymarin do not intercalate into DNA: Rebuttal of data published in the paper J. Mol. Recognit. e2812 (2019).
David Biedermann, Martina Hurtová, Lada Biedermannová, Kateřina Valentová, Vladimír Křen

J Mol Recognit· July 2021

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Protein Binder (ProBi) as a New Class of Structurally Robust Non-Antibody Protein Scaffold for Directed Evolution.
Phuong Ngoc Pham, Maroš Huličiak, Lada Biedermannová, Jiří Černý, Tatsiana Charnavets

Viruses· January 2021

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Structural alphabets for conformational analysis of nucleic acids available at dnatco.datmos.org.
Jiří Černý, Paulína Božíková, Michal Malý, Michal Tykač, Lada Biedermannová

Acta Crystallogr D Struct Biol· September 2020

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Rutinosidase from Aspergillus niger: crystal structure and insight into the enzymatic activity.
Petr Pachl, Jana Kapešová, Jiří Brynda, Lada Biedermannová, Helena Pelantová

FEBS J· August 2020

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WatAA: Atlas of Protein Hydration. Exploring synergies between data mining and ab initio calculations.
Jiří Černý, Bohdan Schneider, Lada Biedermannová

Phys Chem Chem Phys· July 2017

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Hydration of proteins and nucleic acids: Advances in experiment and theory. A review.
Lada Biedermannová, Bohdan Schneider

Biochim Biophys Acta· September 2016

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Redesigning protein cavities as a strategy for increasing affinity in protein-protein interaction: interferon- γ receptor 1 as a model.
Jiří Černý, Lada Biedermannová, Pavel Mikulecký, Jiří Zahradník, Tatsiana Charnavets

Biomed Res Int· March 2016

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Structure of the ordered hydration of amino acids in proteins: analysis of crystal structures.
Lada Biedermannová, Bohdan Schneider

Acta Crystallogr D Biol Crystallogr· November 2015

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Increasing affinity of interferon-γ receptor 1 to interferon-γ by computer-aided design.
Pavel Mikulecký, Jiří Cerný, Lada Biedermannová, Hana Petroková, Milan Kuchař

Biomed Res Int· June 2014

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Software tools for identification, visualization and analysis of protein tunnels and channels.
Jan Brezovsky, Eva Chovancova, Artur Gora, Antonin Pavelka, Lada Biedermannova

Biotechnol Adv· September 2013

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Mechanistic dichotomy in the asymmetric allylation of aldehydes with allyltrichlorosilanes catalyzed by chiral pyridine N-oxides.
Andrei V Malkov, Sigitas Stončius, Mark Bell, Fabiomassimo Castelluzzo, Pedro Ramírez-López

Chemistry· July 2013

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CAVER 3.0: a tool for the analysis of transport pathways in dynamic protein structures.
Eva Chovancova, Antonin Pavelka, Petr Benes, Ondrej Strnad, Jan Brezovsky, Lada Biedermannova

PLoS Comput Biol· May 2013

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A single mutation in a tunnel to the active site changes the mechanism and kinetics of product release in haloalkane dehalogenase LinB.
Lada Biedermannová, Zbyněk Prokop, Artur Gora, Eva Chovancová, Mihály Kovács

J Biol Chem· August 2012

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Novel high-affinity binders of human interferon gamma derived from albumin-binding domain of protein G.
Jawid N Ahmad, Jingjing Li, Lada Biedermannová, Milan Kuchař, Hana Sípová

Proteins· March 2012

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Another role of proline: stabilization interactions in proteins and protein complexes concerning proline and tryptophane.
Lada Biedermannova, Kevin E Riley, Karel Berka, Pavel Hobza, Jiri Vondrasek

Phys Chem Chem Phys· November 2008

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MedusaScore: an accurate force field-based scoring function for virtual drug screening.
Shuangye Yin, Lada Biedermannova, Jiri Vondrasek, Nikolay V Dokholyan

J Chem Inf Model· August 2008

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On the mechanism of asymmetric allylation of aldehydes with allyltrichlorosilanes catalyzed by QUINOX, a chiral isoquinoline N-oxide.
Andrei V Malkov, Pedro Ramírez-López, Lada Biedermannová, Lubomír Rulísek, Lenka Dufková

J Am Chem Soc· April 2008

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