Publications by authors named "Lars Snipen"

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Creating unity: linking 16S rRNA gene sequence information to the core taxonomy of genomes.
Hilde Vinje, Knut Rudi, Lars Snipen

Environ Microbiome· October 2025

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Tracing of streptococcal strains from infant stools across human body sites links site-specific prevalence to adhesins.
Ida Ormaasen, Morten Kjos, Melanie Rae Simpson, Torbjørn Øien, Lars Snipen

Appl Environ Microbiol· September 2025

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The Coastal Seafloor Microbiota Is Structured by Local Selection of Cosmopolitan Taxa.
Knut Rudi, Tonje Nilsen, Ragnhild Pettersen, Nigel Brian Keeley, Jessica Louise Ray, Lars Gustav Snipen

Environ Microbiol Rep· June 2025

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Standardizing a microbiome pipeline for body fluid identification from complex crime scene stains.
Meghna Swayambhu, Mario Gysi, Cordula Haas, Larissa Schuh, Larissa Walser, Lars Snipen

Appl Environ Microbiol· May 2025

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Association of Microbial Networks with the Coastal Seafloor Macrofauna Ecological State.
Tonje Nilsen, Ragnhild Pettersen, Nigel Brian Keeley, Jessica Louise Ray, Sanna Majaneva, Lars Gustav Snipen

Environ Sci Technol· April 2025

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Genomic and functional characterization of the Atlantic salmon gut microbiome in relation to nutrition and health.
Arturo Vera-Ponce de León, Tim Hensen, Matthias Hoetzinger, Shashank Gupta, Bronson Weston, Lars Snipen

Nat Microbiol· November 2024

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Gut bacteria at 6 months of age are associated with immune cell status in 1-year-old children.
Morten Nilsen, Unni Cecilie Nygaard, Petter Brodin, Karin Cecilie Lødrup Carlsen, Cecilie Fredheim, Lars Snipen

Scand J Immunol· April 2024

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A Globally Distributed Bacteroides caccae Strain Is the Most Prevalent Mother-Child Shared Strain in a Large Scandinavian Cohort.
Morten Nilsen, Eva Maria Rehbinder, Karin C Lødrup Carlsen, Guttorm Haugen, Gunilla Hedlin, Lars Snipen

Appl Environ Microbiol· July 2023

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Metagenome-mining indicates an association between bacteriocin presence and strain diversity in the infant gut.
Ida Ormaasen, Knut Rudi, Dzung B Diep, Lars Snipen

BMC Genomics· May 2023

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Prediction of high fecal propionate-to-butyrate ratios using 16S rRNA-based detection of bacterial groups with liquid array diagnostics.
Pranvera Hiseni, Lars Snipen, Robert C Wilson, Kari Furu, Finn Terje Hegge

Biotechniques· January 2023

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Questioning the Quality of 16S rRNA Gene Sequences Derived From Human Gut Metagenome-Assembled Genomes.
Pranvera Hiseni, Lars Snipen, Robert C Wilson, Kari Furu, Knut Rudi

Front Microbiol· February 2022

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Assessing time dependent changes in microbial composition of biological crime scene traces using microbial RNA markers.
Andrea Patrizia Salzmann, Natasha Arora, Giancarlo Russo, Susanne Kreutzer, Lars Snipen

Forensic Sci Int Genet· July 2021

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HumGut: a comprehensive human gut prokaryotic genomes collection filtered by metagenome data.
Pranvera Hiseni, Knut Rudi, Robert C Wilson, Finn Terje Hegge, Lars Snipen

Microbiome· July 2021

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Reduced metagenome sequencing for strain-resolution taxonomic profiles.
Lars Snipen, Inga-Leena Angell, Torbjørn Rognes, Knut Rudi

Microbiome· March 2021

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Fecal Microbiota Nutrient Utilization Potential Suggests Mucins as Drivers for Initial Gut Colonization of Mother-Child-Shared Bacteria.
Morten Nilsen, Asima Lokmic, Inga Leena Angell, Karin C Lødrup Carlsen, Kai-Håkon Carlsen, Lars Snipen

Appl Environ Microbiol· February 2021

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Butyrate Levels in the Transition from an Infant- to an Adult-Like Gut Microbiota Correlate with Bacterial Networks Associated with and .
Morten Nilsen, Carina Madelen Saunders, Inga Leena Angell, Magnus Ø Arntzen, Karin C Lødrup Carlsen, Lars Snipen

Genes (Basel)· October 2020

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Predicting the origin of stains from whole miRNome massively parallel sequencing data.
Guro Dørum, Sabrina Ingold, Erin Hanson, Jack Ballantyne, Giancarlo Russo, Lars Snipen

Forensic Sci Int Genet· May 2019

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Rapid Succession of Actively Transcribing Denitrifier Populations in Agricultural Soil During an Anoxic Spell.
Binbin Liu, Xiaojun Zhang, Lars R Bakken, Lars Snipen, Åsa Frostegård

Front Microbiol· January 2019

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Optimizing body fluid recognition from microbial taxonomic profiles.
Eirik Nataas Hanssen, Kristian Hovde Liland, Peter Gill, Lars Snipen

Forensic Sci Int Genet· November 2018

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Comparison of reduced metagenome and 16S rRNA gene sequencing for determination of genetic diversity and mother-child overlap of the gut associated microbiota.
Anuradha Ravi, Ekaterina Avershina, Inga Leena Angell, Jane Ludvigsen, Prasanth Manohar, Lars Snipen

J Microbiol Methods· June 2018

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Predicting the origin of stains from next generation sequencing mRNA data.
Guro Dørum, Sabrina Ingold, Erin Hanson, Jack Ballantyne, Lars Snipen

Forensic Sci Int Genet· May 2018

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Effects of glucose availability in Lactobacillus sakei; metabolic change and regulation of the proteome and transcriptome.
Anette McLeod, Ellen F Mosleth, Ida Rud, Filipe Branco Dos Santos, Lars Snipen

PLoS One· December 2017

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Body fluid prediction from microbial patterns for forensic application.
Eirik Nataas Hanssen, Ekaterina Avershina, Knut Rudi, Peter Gill, Lars Snipen

Forensic Sci Int Genet· September 2017

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microclass: an R-package for 16S taxonomy classification.
Kristian Hovde Liland, Hilde Vinje, Lars Snipen

BMC Bioinformatics· March 2017

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Cecal microbiota association with tumor load in a colorectal cancer mouse model.
Line Skute Bråten, Marianne Sødring, Jan Erik Paulsen, Lars Gustav Snipen, Knut Rudi

Microb Ecol Health Dis· January 2017

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