Publications by authors named "Lee Pedersen"

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From Steroid and Drug Metabolism to Glycobiology, Using Sulfotransferase Structures to Understand and Tailor Function.
Lars C Pedersen, MyeongJin Yi, Lee G Pedersen, Andrea M Kaminski

Drug Metab Dispos· July 2022

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Preferential DNA Polymerase β Reverse Reaction with Imidodiphosphate.
Lalith Perera, William A Beard, Lee G Pedersen, David D Shock, Samuel H Wilson

ACS Omega· June 2020

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Ligand induced dissociation of the AR homodimer precedes AR monomer translocation to the nucleus.
Ryota Shizu, Kosuke Yokobori, Lalith Perera, Lee Pedersen, Masahiko Negishi

Sci Rep· November 2019

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Dysfunctional endogenous FIX impairs prophylaxis in a mouse hemophilia B model.
Brian Cooley, George J Broze, David M Mann, Feng-Chang Lin, Lee G Pedersen

Blood· May 2019

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Warfarin and vitamin K epoxide reductase: a molecular accounting for observed inhibition.
Sangwook Wu, Xuejie Chen, Da-Yun Jin, Darrel W Stafford, Lee G Pedersen

Blood· August 2018

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Revealing the role of the product metal in DNA polymerase β catalysis.
Lalith Perera, Bret D Freudenthal, William A Beard, Lee G Pedersen, Samuel H Wilson

Nucleic Acids Res· March 2017

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Hiding in Plain Sight: The Bimetallic Magnesium Covalent Bond in Enzyme Active Sites.
Lalith Perera, William A Beard, Lee G Pedersen, Samuel H Wilson

Inorg Chem· January 2017

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Applications of quantum mechanical/molecular mechanical methods to the chemical insertion step of DNA and RNA polymerization.
Lalith Perera, William A Beard, Lee G Pedersen, Samuel H Wilson

Adv Protein Chem Struct Biol· July 2016

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Do the crystallographic forms of prethrombin-2 revert to a single form in solution?
Sangwook Wu, Joong-Youn Shim, Chang Jun Lee, Lee G Pedersen

Biophys Chem· March 2016

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Requirement for transient metal ions revealed through computational analysis for DNA polymerase going in reverse.
Lalith Perera, Bret D Freudenthal, William A Beard, David D Shock, Lee G Pedersen

Proc Natl Acad Sci U S A· September 2015

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A model for the unique role of factor Va A2 domain extension in the human ternary thrombin-generating complex.
Joong-Youn Shim, Chang Jun Lee, Sangwook Wu, Lee G Pedersen

Biophys Chem· April 2015

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Analysis on long-range residue-residue communication using molecular dynamics.
Sangwook Wu, Chang Jun Lee, Lee G Pedersen

Proteins· November 2014

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Structural comparison of DNA polymerase architecture suggests a nucleotide gateway to the polymerase active site.
Sangwook Wu, William A Beard, Lee G Pedersen, Samuel H Wilson

Chem Rev· March 2014

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Amino acid substitution in the active site of DNA polymerase β explains the energy barrier of the nucleotidyl transfer reaction.
Vinod K Batra, Lalith Perera, Ping Lin, David D Shock, William A Beard, Lars C Pedersen, Lee G Pedersen

J Am Chem Soc· May 2013

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Phenobarbital indirectly activates the constitutive active androstane receptor (CAR) by inhibition of epidermal growth factor receptor signaling.
Shingo Mutoh, Mack Sobhany, Rick Moore, Lalith Perera, Lee Pedersen

Sci Signal· May 2013

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Weakly Antiferromagentic Coupling Via Superexchange Interaction Between Mn(II)-Mn(II) Atoms: A QM/MM Study of the Active Site of Human Cytosolic X-Propyl Aminopeptidase P.
Sangwook Wu, Shubin Liu, Sooyeon Sim, Lee G Pedersen

J Phys Chem Lett· August 2012

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HPAM: Hirshfeld Partitioned Atomic Multipoles.
Dennis M Elking, Lalith Perera, Lee G Pedersen

Comput Phys Commun· February 2012

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A finite field method for calculating molecular polarizability tensors for arbitrary multipole rank.
Dennis M Elking, Lalith Perera, Robert Duke, Thomas Darden, Lee G Pedersen

J Comput Chem· November 2011

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Molecular insights into DNA polymerase deterrents for ribonucleotide insertion.
Nisha A Cavanaugh, William A Beard, Vinod K Batra, Lalith Perera, Lee G Pedersen

J Biol Chem· September 2011

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A hetero-dimer model for concerted action of vitamin K carboxylase and vitamin K reductase in vitamin K cycle.
Sangwook Wu, Shubin Liu, Charles H Davis, Darrel W Stafford, John D Kulman, Lee G Pedersen

J Theor Biol· June 2011

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Modeling of the DNA-binding site of yeast Pms1 by mass spectrometry.
Allison N Schorzman, Lalith Perera, Jenny M Cutalo-Patterson, Lars C Pedersen, Lee G Pedersen

DNA Repair (Amst)· May 2011

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Lee Pedersen's work in theoretical and computational chemistry and biochemistry.
Lee G Pedersen

World J Biol Chem· February 2011

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Quantum Chemical Study of the Mechanism of Action of Vitamin K Carboxylase in Solvent.
Sangwook Wu, Shubin Liu, Charles H Davis, Darrel W Stafford, Lee G Pedersen

Int J Quantum Chem· December 2010

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Atomic forces for geometry-dependent point multipole and gaussian multipole models.
Dennis M Elking, Lalith Perera, Robert Duke, Thomas Darden, Lee G Pedersen

J Comput Chem· November 2010

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Obligatory role in GTP hydrolysis for the amide carbonyl oxygen of the Mg(2+)-coordinating Thr of regulatory GTPases.
Adolfo Zurita, Yinghao Zhang, Lee Pedersen, Tom Darden, Lutz Birnbaumer

Proc Natl Acad Sci U S A· May 2010

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