Publications by authors named "Lei M Li"

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Saltations of cis-regulatory modules in Canidae and Hominidae.
Jianhui Shi, Linting Wang, Lei M Li

Sci Rep· August 2025

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Empirical Lossless Compression Bound of a Data Sequence.
Lei M Li

Entropy (Basel)· August 2025

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A pretrained transformer model for decoding individual glucose dynamics from continuous glucose monitoring data.
Yurun Lu, Dan Liu, Zhongming Liang, Rui Liu, Pei Chen, Yitong Liu, Jiachen Li, Lei M Li, Huating Li

Natl Sci Rev· May 2025

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A four eigen-phase model of multi-omics unveils new insights into yeast metabolic cycle.
Linting Wang, Xiaojie Li, Jianhui Shi, Lei M Li

NAR Genom Bioinform· March 2025

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A data integration approach unveils a transcriptional signature of type 2 diabetes progression in rat and human islets.
Shenghao Cao, Linting Wang, Yance Feng, Xiao-Ding Peng, Lei M Li

PLoS One· November 2023

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Reconstructing COVID-19 incidences from positive RT-PCR tests by deconvolution.
Mengtian Li, Jiachen Li, Ke Wang, Lei M Li

BMC Infect Dis· October 2023

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RegCloser: a robust regression approach to closing genome gaps.
Shenghao Cao, Mengtian Li, Lei M Li

BMC Bioinformatics· June 2023

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Comparative Proteome and Cis-Regulatory Element Analysis Reveals Specific Molecular Pathways Conserved in Dog and Human Brains.
Huilin Hong, Zhiguang Zhao, Xiahe Huang, Chao Guo, Hui Zhao, Lei M Li

Mol Cell Proteomics· August 2022

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RegScaf: a regression approach to scaffolding.
Mengtian Li, Lei M Li

Bioinformatics· May 2022

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MUREN: a robust and multi-reference approach of RNA-seq transcript normalization.
Yance Feng, Lei M Li

BMC Bioinformatics· July 2021

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Dual Eigen-modules of Cis-Element Regulation Profiles and Selection of Cognition-Language Eigen-direction along Evolution in Hominidae.
Liang Li, Sheng Zhang, Lei M Li

Mol Biol Evol· June 2020

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The cis-trans binding strength defined by motif frequencies facilitates statistical inference of transcriptional regulation.
Yance Feng, Sheng Zhang, Liang Li, Lei M Li

BMC Bioinformatics· May 2019

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BAUM: improving genome assembly by adaptive unique mapping and local overlap-layout-consensus approach.
Anqi Wang, Zhanyu Wang, Zheng Li, Lei M Li

Bioinformatics· June 2018

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Estimating Phred scores of Illumina base calls by logistic regression and sparse modeling.
Sheng Zhang, Bo Wang, Lin Wan, Lei M Li

BMC Bioinformatics· July 2017

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A Novel Dual Eigen-Analysis of Mouse Multi-Tissues' Expression Profiles Unveils New Perspectives into Type 2 Diabetes.
Lei M Li, Xiuxiu Liu, Lin Wang, Yong Wang, Xiuqin Liu, Li Shen

Sci Rep· July 2017

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An adaptive decorrelation method removes Illumina DNA base-calling errors caused by crosstalk between adjacent clusters.
Bo Wang, Lin Wan, Anqi Wang, Lei M Li

Sci Rep· February 2017

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Induction of apoptosis through ER stress and TP53 in MCF-7 cells by the nanoparticle [Gd@C82(OH)22]n: A systems biology study.
Lin Wang, Jie Meng, Weipeng Cao, Qizhai Li, Yuqing Qiu, Lei M Li

Methods· June 2014

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SEME: a fast mapper of Illumina sequencing reads with statistical evaluation.
Shijian Chen, Anqi Wang, Lei M Li

J Comput Biol· November 2013

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HapEdit: an accuracy assessment viewer for haplotype assembly using massively parallel DNA-sequencing technologies.
Jong Hyun Kim, Woo-Cheol Kim, Lei M Li, Sanghyun Park

Nucleic Acids Res· July 2011

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Comparative analyses of time-course gene expression profiles of the long-lived sch9Delta mutant.
Huanying Ge, Min Wei, Paola Fabrizio, Jia Hu, Chao Cheng, Lei M Li

Nucleic Acids Res· January 2010

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HAPLOWSER: a whole-genome haplotype browser for personal genome and metagenome.
Jong Hyun Kim, Woo-Cheol Kim, Michael S Waterman, Sanghyun Park, Lei M Li

Bioinformatics· September 2009

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Tor1/Sch9-regulated carbon source substitution is as effective as calorie restriction in life span extension.
Min Wei, Paola Fabrizio, Federica Madia, Jia Hu, Huanying Ge, Lei M Li

PLoS Genet· May 2009

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Systematic identification of transcription factors associated with patient survival in cancers.
Chao Cheng, Lei M Li, Pedro Alves, Mark Gerstein

BMC Genomics· May 2009

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A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays.
Huanying Ge, Chao Cheng, Lei M Li

BMC Bioinformatics· April 2008

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Inferring microRNA activities by combining gene expression with microRNA target prediction.
Chao Cheng, Lei M Li

PLoS One· April 2008

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