Publications by authors named "Lexin Chen"

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Structural Domain Analysis of Heparin and Heparan Sulfate Combined With Label-Free Quantitative Proteomics to Elucidate Their Functional Diversity in Liver Cancer and APAP-Induced Liver Injury.
Zizhe An, Qingqing Chen, Changkai Bu, Lexin Chen, Deling Shi

Mol Cell Proteomics· November 2025

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Effect of thickness and aging on key mechanical properties of 3D-printed crowns.
Pei-Wen Peng, Chiao-Yun Peng, Jia-Syuan Chou, Le-Xin Chen, Chun-Wei Chao

Eur J Oral Sci· November 2025

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mdBIRCH for Fast, Scalable, Online Clustering of Molecular Dynamics Trajectories.
Jherome Brylle Woody Santos, Lexin Chen, Ramón Alain Miranda-Quintana

bioRxiv· November 2025

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Accuracy and fitness of digital light processing-fabricated resin-based permanent crowns after thermal aging.
Pei-Wen Peng, Wei-Jen Chang, Jia-Syuan Chou, Le-Xin Chen, Cheng-Cho Chuang

J Dent Sci· October 2025

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Influence of Post-Washing Time and Build Orientation on Mechanical Properties and Biocompatibility of Additively Manufactured Permanent Dental Resin Material.
Pei-Wen Peng, Jia-Syuan Chou, Le-Xin Chen, Po-En Chuang, Hidekazu Takahashi

Polymers (Basel)· October 2025

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Undersampling techniques for large datasets.
Lexin Chen, Ramón Alain Miranda-Quintana

bioRxiv· September 2025

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YiQiChuTan formula (YQCTF) inhibit the progression of non-small cell lung cancer via down-regulating EGFR/ITGB2 signaling: Triangulated evidence from network pharmacology, proteomic profiling, and experimental validation.
Zhi-Hao Wu, Ming-Jun Li, Yu-Lin Hong, Le-Xin Chen, Chun-Qi Xu

Phytomedicine· August 2025

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CADENCE: Clustering Algorithm─Density-Based Exploration and Novelty Clustering with Efficiency.
Lexin Chen, Daniel R Roe, Ramón Alain Miranda-Quintana

J Chem Inf Model· July 2025

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Hierarchical Extended Linkage Method (HELM)'s Deep Dive into Hybrid Clustering Strategies.
Lexin Chen, Jherome Brylle Woody Santos, Jokent Gaza, Alberto Perez, Ramón Alain Miranda-Quintana

J Chem Inf Model· June 2025

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Scaling -Means for Multi-Million Frames: A Stratified NANI Approach for Large-Scale MD Simulations.
Jherome Brylle Woody Santos, Lexin Chen, Ramón Alain Miranda-Quintana

bioRxiv· June 2025

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Divide and Cluster: The DIVINE Framework for Deterministic Top-Down Analysis of Molecular Dynamics Trajectories.
Jherome Brylle Woody Santos, Lexin Chen, Ramón Alain Miranda-Quintana

bioRxiv· June 2025

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Extended Quality (eQual): Radial Threshold Clustering Based on -ary Similarity.
Lexin Chen, Micah Smith, Daniel R Roe, Ramón Alain Miranda-Quintana

J Chem Inf Model· May 2025

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SHINE: Deterministic Many-to-Many Clustering of Molecular Pathways.
Lexin Chen, Jeremy M G Leung, Krisztina Zsigmond, Lillian T Chong, Ramón Alain Miranda-Quintana

J Chem Inf Model· May 2025

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BitBIRCH: efficient clustering of large molecular libraries.
Kenneth López Pérez, Vicky Jung, Lexin Chen, Kate Huddleston, Ramón Alain Miranda-Quintana

Digit Discov· April 2025

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Hierarchical Extended Linkage Method (HELM)'s Deep Dive into Hybrid Clustering Strategies.
Lexin Chen, Jherome Brylle Woody Santos, Jokent Gaza, Alberto Perez, Ramón Alain Miranda-Quintana

bioRxiv· March 2025

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SHINE: Deterministic Many-to-Many clustering of Molecular Pathways.
Lexin Chen, Jeremy M G Leung, Krisztina Zsigmond, Lillian T Chong, Ramón Alain Miranda-Quintana

bioRxiv· February 2025

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CADENCE: Clustering Algorithm - Density-based Exploration and Novelty Clustering with Efficiency.
Lexin Chen, Daniel R Roe, Ramón Alain Miranda-Quintana

bioRxiv· February 2025

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Shikonin ameliorated LPS-induced acute lung injury in mice via modulating MCU-mediated mitochondrial Ca and macrophage polarization.
Huang Bao-Yuan, Lu Shu-Ru, Chen Le-Xin, Bai Liang-Liang, Li Cheng-Cheng

Phytomedicine· December 2024

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Extended Quality (eQual): Radial threshold clustering based on n-ary similarity.
Lexin Chen, Micah Smith, Daniel R Roe, Ramón Alain Miranda-Quintana

bioRxiv· December 2024

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Molecular similarity: Theory, applications, and perspectives.
Kenneth López-Pérez, Juan F Avellaneda-Tamayo, Lexin Chen, Edgar López-López, K Eurídice Juárez-Mercado

Artif Intell Chem· December 2024

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Efficient clustering of large molecular libraries.
Kenneth López Pérez, Vicky Jung, Lexin Chen, Kate Huddleston, Ramón Alain Miranda-Quintana

bioRxiv· August 2024

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k-Means NANI: An Improved Clustering Algorithm for Molecular Dynamics Simulations.
Lexin Chen, Daniel R Roe, Matthew Kochert, Carlos Simmerling, Ramón Alain Miranda-Quintana

J Chem Theory Comput· July 2024

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Protein Retrieval via Integrative Molecular Ensembles (PRIME) through Extended Similarity Indices.
Lexin Chen, Arup Mondal, Alberto Perez, Ramón Alain Miranda-Quintana

J Chem Theory Comput· July 2024

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Cross-sectional studies of the causal link between asthma and osteoporosis: insights from Mendelian randomization and bioinformatics analysis.
Lexin Chen, Can Li, Hangang Chen, Yangli Xie, Nan Su, Lin Chen, Bo Chen

Osteoporos Int· June 2024

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k-Means NANI: an improved clustering algorithm for Molecular Dynamics simulations.
Lexin Chen, Daniel R Roe, Matthew Kochert, Carlos Simmerling, Ramón Alain Miranda-Quintana

bioRxiv· March 2024

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