Publications by authors named "Li-Zhen Sun"

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Random Walking Dynamics of a DNA Nanorobot on a Two-Dimensional Nanopore Track.
Li-Zhen Sun

J Phys Chem B· November 2025

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Autonomous walking dynamics of a nanorobot on a nanopore track driven by salt concentration gradients.
Li-Zhen Sun, Xiu-Chong Liu

J Chem Phys· February 2025

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Na-Mg ion effects on conformation and translocation dynamics of single-stranded RNA: Cooperation and competition.
Yi-Fan Rao, Li-Zhen Sun, Meng-Bo Luo

Int J Biol Macromol· May 2024

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Moving dynamics of a nanorobot with three DNA legs on nanopore-based tracks.
Li-Zhen Sun, Yao-Jun Ying

Nanoscale· October 2023

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Mutual effects between single-stranded DNA conformation and Na-Mg ion competition in mixed salt solutions.
Li-Zhen Sun, Jun-Lin Qian, Pinggen Cai, Xiaojun Xu

Phys Chem Chem Phys· September 2022

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Dataset of normalized probability distributions of virtual bond lengths, bond angles, and dihedral angles for the coarse-grained single-stranded DNA structures.
Jun-Lin Qian, Li-Zhen Sun

Data Brief· June 2022

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Effects of electrostatic interactions on global folding and local conformational dynamics of a multidomain Y-family DNA polymerase.
Qing-Miao Nie, Li-Zhen Sun, Hai-Bin Li, Xiakun Chu, Jin Wang

Phys Chem Chem Phys· September 2021

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Translocation of a looped polymer threading through a nanopore.
Jia Chen, Xian Chen, Li-Zhen Sun, Xiao-Jun Xu, Meng-Bo Luo

Soft Matter· April 2021

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The translocation dynamics of the polymer through a conical pore: Non-stuck, weak-stuck, and strong-stuck modes.
Li-Zhen Sun, Wei-Ping Cao, Chang-Hui Wang, Xiaojun Xu

J Chem Phys· February 2021

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RLDOCK: A New Method for Predicting RNA-Ligand Interactions.
Li-Zhen Sun, Yangwei Jiang, Yuanzhe Zhou, Shi-Jie Chen

J Chem Theory Comput· November 2020

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Kinetic Mechanism of RNA Helix-Terminal Basepairing-A Kinetic Minima Network Analysis.
Fengfei Wang, Li-Zhen Sun, Pinggen Cai, Shi-Jie Chen, Xiaojun Xu

Biophys J· November 2019

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Helix-Based RNA Landscape Partition and Alternative Secondary Structure Determination.
Fengfei Wang, Li-Zhen Sun, Tingting Sun, Shan Chang, Xiaojun Xu

ACS Omega· September 2019

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Predicting Monovalent Ion Correlation Effects in Nucleic Acids.
Li-Zhen Sun, Yuanzhe Zhou, Shi-Jie Chen

ACS Omega· August 2019

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Simulation study on the migration of diblock copolymers in periodically patterned slits.
Chao Wang, Yan-Li Zhou, Li-Zhen Sun, Ying-Cai Chen, Meng-Bo Luo

J Chem Phys· April 2019

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Randomness of Eigenstates of Many-Body Quantum Systems.
Li-Zhen Sun, Qingmiao Nie, Haibin Li

Entropy (Basel)· February 2019

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Predicting RNA-Metal Ion Binding with Ion Dehydration Effects.
Li-Zhen Sun, Shi-Jie Chen

Biophys J· January 2019

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Trapped and non-trapped polymer translocations through a spherical pore.
Li-Zhen Sun, Chang-Hui Wang, Meng-Bo Luo, Haibin Li

J Chem Phys· January 2019

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Simulation study on the translocation of polyelectrolyte through conical nanopores.
Li-Zhen Sun, Haibin Li, Xiaojun Xu, Meng-Bo Luo

J Phys Condens Matter· December 2018

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Theoretical study on the polymer translocation into an attractive sphere.
Li-Zhen Sun, Meng-Bo Luo, Wei-Ping Cao, Haibin Li

J Chem Phys· July 2018

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A New Method to Predict Ion Effects in RNA Folding.
Li-Zhen Sun, Shi-Jie Chen

Methods Mol Biol· April 2018

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Theory Meets Experiment: Metal Ion Effects in HCV Genomic RNA Kissing Complex Formation.
Li-Zhen Sun, Xiao Heng, Shi-Jie Chen

Front Mol Biosci· December 2017

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MCTBI: a web server for predicting metal ion effects in RNA structures.
Li-Zhen Sun, Jing-Xiang Zhang, Shi-Jie Chen

RNA· August 2017

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Predicting Ion Effects in an RNA Conformational Equilibrium.
Li-Zhen Sun, Clayton Kranawetter, Xiao Heng, Shi-Jie Chen

J Phys Chem B· August 2017

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Temperature dependence of the translocation time of polymer through repulsive nanopores.
Meng-Bo Luo, Dessalegne A Tsehay, Li-Zhen Sun

J Chem Phys· July 2017

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Theory and Modeling of RNA Structure and Interactions with Metal Ions and Small Molecules.
Li-Zhen Sun, Dong Zhang, Shi-Jie Chen

Annu Rev Biophys· May 2017

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