Publications by authors named "Lianyi Han"

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ZeroTuneBio NER: A three-stage framework for zero-shot and zero-tuning biomedical entity extraction using large language models and prompt engineering.
Mingyuan Qin, Lei Feng, Jing Lu, Ziyan Sun, Zhengyu Yu, Lianyi Han

Comput Methods Programs Biomed· December 2025

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A comprehensive reference catalog of human skin DNA virome reveals novel viral diversity and microenvironmental influences.
Zhiming Li, Shenghui Li, Chongyin Han, Yuxiao Chen, Hefu Zhen, Lianyi Han

Microbiol Spectr· November 2025

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PersADE: a database of personalized adverse drug events and their underlying molecular mechanisms.
Zhuohang Yu, Yimeng Wang, Yintao Zhang, Ying Zhou, Xiaoxiao Hu, Lianyi Han

Nucleic Acids Res· November 2025

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MoleculeFormer is a GCN-transformer architecture for molecular property prediction.
Mingyuan Qin, Ziyan Sun, Lei Feng, Chongyin Han, Jingjing Xia, Lianyi Han

Commun Biol· November 2025

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Dynamic clinical trial success rates for drugs in the 21st century.
Ying Zhou, Yintao Zhang, Hangwei Xu, Zhen Chen, Shijie Huang, Hongning Zhang, Lianyi Han

Nat Commun· October 2025

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Microllm: a structured information extraction tool using large language models and named entity recognition in microbiology.
Jing Lu, Fei Li, Lei Feng, Zhengyu Yu, Jianyu Lu, Lianyi Han

Brief Bioinform· August 2025

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Optimizing Skin Surface Metabolomics: A Comprehensive Evaluation of Sampling Methods, Extraction Solvents, and Analytical Techniques.
Huizhen Chen, Yu Chen, Yi Zhou, Shensong Cao, Jing Lu, Lianyi Han

J Invest Dermatol· May 2025

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Deep Multi-Modal Skin-Imaging-Based Information-Switching Network for Skin Lesion Recognition.
Yingzhe Yu, Huiqiong Jia, Li Zhang, Suling Xu, Xiaoxia Zhu, Lianyi Han

Bioengineering (Basel)· March 2025

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PDCdb: the biological activity and pharmaceutical information of peptide-drug conjugate (PDC).
Xiuna Sun, Hanyang Li, Zhen Chen, Yang Zhang, Zhangle Wei, Hangwei Xu, Lianyi Han

Nucleic Acids Res· January 2025

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MolBiC: the cell-based landscape illustrating molecular bioactivities.
Yichao Ge, Mengjie Yang, Xinyuan Yu, Ying Zhou, Yintao Zhang, Lianyi Han

Nucleic Acids Res· January 2025

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rU-Net, Multi-Scale Feature Fusion and Transfer Learning: Unlocking the Potential of Cuffless Blood Pressure Monitoring With PPG and ECG.
Jiaming Chen, Xueling Zhou, Lei Feng, Bingo Wing-Kuen Ling, Lianyi Han, Hongtao Zhang

IEEE J Biomed Health Inform· January 2025

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RVvictor: Virus RNA-directed molecular interactions for RNA virus infection.
Kuerbannisha Amahong, Wei Zhang, Yuhong Liu, Teng Li, Shijie Huang, Lianyi Han

Comput Biol Med· February 2024

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SingPro: a knowledge base providing single-cell proteomic data.
Xichen Lian, Yintao Zhang, Ying Zhou, Xiuna Sun, Shijie Huang, Lianyi Han

Nucleic Acids Res· January 2024

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CRUSE -An innovative mobile application for patient monitoring and management in chronic spontaneous urticaria.
Sophia Neisinger, Bernardo Sousa Pinto, Aiste Ramanauskaite, Jean Bousquet, Karsten Weller, Jonathan A Bernstein, Hannah Hardin, Lianyi Han

Clin Transl Allergy· January 2024

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Tripartite motif containing 26 prevents steatohepatitis progression by suppressing C/EBPδ signalling activation.
Minxuan Xu, Jun Tan, Xin Liu, Li Han, Chenxu Ge, Yujie Zhang, Qinqin Zhang, Shuguang Zhang, Chunxiao Chang, Lianyi Han

Nat Commun· October 2023

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CovInter: interaction data between coronavirus RNAs and host proteins.
Kuerbannisha Amahong, Wei Zhang, Ying Zhou, Song Zhang, Jiayi Yin, Lianyi Han

Nucleic Acids Res· January 2023

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Virtual reality for neurorehabilitation: A bibliometric analysis of knowledge structure and theme trends.
Qi-Fan Guo, Lin He, Wei Su, Hui-Xin Tan, Lian-Yi Han, Han-Hong Jiang

Front Public Health· November 2022

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Object-Guided Instance Segmentation With Auxiliary Feature Refinement for Biological Images.
Jingru Yi, Pengxiang Wu, Hui Tang, Bo Liu, Qiaoying Huang, Lianyi Han

IEEE Trans Med Imaging· September 2021

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CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.
Aron Marchler-Bauer, Yu Bo, Lianyi Han, Jane He, Christopher J Lanczycki, Narmada Thanki, Dachuan Zhang, Chanjuan Zheng

Nucleic Acids Res· January 2017

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PubChem Substance and Compound databases.
Sunghwan Kim, Paul A Thiessen, Evan E Bolton, Jie Chen, Gang Fu, Lianyi Han, Jian Zhang

Nucleic Acids Res· January 2016

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Target enhanced 2D similarity search by using explicit biological activity annotations and profiles.
Xiang Yu, Lewis Y Geer, Lianyi Han, Stephen H Bryant

J Cheminform· November 2015

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PubChem structure-activity relationship (SAR) clusters.
Sunghwan Kim, Lianyi Han, Bo Yu, Volker D Hähnke, Evan E Bolton

J Cheminform· July 2015

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PubChem's BioAssay Database.
Yanli Wang, Jewen Xiao, Tugba O Suzek, Jian Zhang, Jiyao Wang, Lianyi Han

Nucleic Acids Res· January 2012

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PubChem3D: a new resource for scientists.
Evan E Bolton, Jie Chen, Sunghwan Kim, Lianyi Han, Siqian He, Vahan Simonyan, Jian Zhang

J Cheminform· September 2011

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The Text-mining based PubChem Bioassay neighboring analysis.
Lianyi Han, Tugba O Suzek, Yanli Wang, Steve H Bryant

BMC Bioinformatics· November 2010

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