Publications by authors named "Luca Denti"

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Alignment-free detection of differences between sequencing datasets.
Alessia Petescia, Luca Denti, Askar Gafurov, Viktória Hodorová, Jozef Nosek

iScience· November 2025

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Differential quantification of alternative splicing events on spliced pangenome graphs.
Simone Ciccolella, Davide Cozzi, Gianluca Della Vedova, Stephen Njuguna Kuria, Paola Bonizzoni, Luca Denti

PLoS Comput Biol· December 2024

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PangeBlocks: customized construction of pangenome graphs via maximal blocks.
Jorge Avila Cartes, Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Luca Denti

BMC Bioinformatics· November 2024

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Diverse somatic Transformer and sex chromosome karyotype pathways regulate gene expression in Drosophila gonad development.
Sharvani Mahadevaraju, Soumitra Pal, Pradeep Bhaskar, Brennan D McDonald, Leif Benner, Luca Denti

bioRxiv· August 2024

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RecGraph: recombination-aware alignment of sequences to variation graphs.
Jorge Avila Cartes, Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Luca Denti

Bioinformatics· May 2024

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SVDSS: structural variation discovery in hard-to-call genomic regions using sample-specific strings from accurate long reads.
Luca Denti, Parsoa Khorsand, Paola Bonizzoni, Fereydoun Hormozdiari, Rayan Chikhi

Nat Methods· April 2023

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Alignment-Free Genotyping of Known Variations with MALVA.
Giulia Bernardini, Luca Denti, Marco Previtali

Methods Mol Biol· June 2022

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Antiparasitic Drugs against SARS-CoV-2: A Comprehensive Literature Survey.
Estefanía Calvo-Alvarez, Maria Dolci, Federica Perego, Lucia Signorini, Silvia Parapini, Luca Denti

Microorganisms· June 2022

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MALVIRUS: an integrated application for viral variant analysis.
Simone Ciccolella, Luca Denti, Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola

BMC Bioinformatics· April 2022

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Mechanical Cues, E-Cadherin Expression and Cell "Sociality" Are Crucial Crossroads in Determining Pancreatic Ductal Adenocarcinoma Cells Behavior.
Francesca Bianchi, Michele Sommariva, Laura Brigida Cornaghi, Luca Denti, Ambra Nava

Cells· April 2022

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Simvastatin Prevents Liver Microthrombosis and Sepsis Induced Coagulopathy in a Rat Model of Endotoxemia.
Vincenzo La Mura, Nicoletta Gagliano, Francesca Arnaboldi, Patrizia Sartori, Patrizia Procacci, Luca Denti

Cells· March 2022

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Shark: fishing relevant reads in an RNA-Seq sample.
Luca Denti, Yuri Pirola, Marco Previtali, Tamara Ceccato, Gianluca Della Vedova

Bioinformatics· May 2021

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Comparative genome analysis using sample-specific string detection in accurate long reads.
Parsoa Khorsand, Luca Denti, , Paola Bonizzoni, Rayan Chikhi

Bioinform Adv· May 2021

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Triplet-based similarity score for fully multilabeled trees with poly-occurring labels.
Simone Ciccolella, Giulia Bernardini, Luca Denti, Paola Bonizzoni, Marco Previtali

Bioinformatics· April 2021

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MALVA: Genotyping by Mapping-free ALlele Detection of Known VAriants.
Luca Denti, Marco Previtali, Giulia Bernardini, Alexander Schönhuth, Paola Bonizzoni

iScience· August 2019

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ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events.
Luca Denti, Raffaella Rizzi, Stefano Beretta, Gianluca Della Vedova, Marco Previtali

BMC Bioinformatics· November 2018

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