Publications by authors named "Lucas Lochovsky"

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Genome-wide profiling of highly similar paralogous genes using HiFi sequencing.
Xiao Chen, Daniel Baker, Egor Dolzhenko, Joseph M Devaney, Jessica Noya, Lucas Lochovsky

Nat Commun· March 2025

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Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.
Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah A Wala, Ofer Shapira, Lucas Lochovsky

Nature· February 2023

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NIMBus: a negative binomial regression based Integrative Method for mutation Burden Analysis.
Jing Zhang, Jason Liu, Patrick McGillivray, Caroline Yi, Lucas Lochovsky

BMC Bioinformatics· October 2020

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RADAR: annotation and prioritization of variants in the post-transcriptional regulome of RNA-binding proteins.
Jing Zhang, Jason Liu, Donghoon Lee, Jo-Jo Feng, Lucas Lochovsky

Genome Biol· July 2020

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An integrative ENCODE resource for cancer genomics.
Jing Zhang, Donghoon Lee, Vineet Dhiman, Peng Jiang, Jie Xu, Lucas Lochovsky

Nat Commun· July 2020

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Passenger Mutations in More Than 2,500 Cancer Genomes: Overall Molecular Functional Impact and Consequences.
Sushant Kumar, Jonathan Warrell, Shantao Li, Patrick D McGillivray, William Meyerson, Lucas Lochovsky

Cell· March 2020

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Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.
Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah A Wala, Ofer Shapira, Lucas Lochovsky

Nature· February 2020

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MOAT: efficient detection of highly mutated regions with the Mutations Overburdening Annotations Tool.
Lucas Lochovsky, Jing Zhang, Mark Gerstein

Bioinformatics· March 2018

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LARVA: an integrative framework for large-scale analysis of recurrent variants in noncoding annotations.
Lucas Lochovsky, Jing Zhang, Yao Fu, Ekta Khurana, Mark Gerstein

Nucleic Acids Res· September 2015

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Integrative annotation of variants from 1092 humans: application to cancer genomics.
Ekta Khurana, Yao Fu, Vincenza Colonna, Xinmeng Jasmine Mu, Hyun Min Kang, Lucas Lochovsky

Science· October 2013

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ACT: aggregation and correlation toolbox for analyses of genome tracks.
Justin Jee, Joel Rozowsky, Kevin Y Yip, Lucas Lochovsky, Robert Bjornson

Bioinformatics· April 2011

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PhyloPro: a web-based tool for the generation and visualization of phylogenetic profiles across Eukarya.
Xuejian Xiong, Hongyan Song, Tuan On, Lucas Lochovsky, Nicholas J Provart

Bioinformatics· March 2011

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Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.
Mark B Gerstein, Zhi John Lu, Eric L Van Nostrand, Chao Cheng, Bradley I Arshinoff, Lucas Lochovsky

Science· December 2010

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