Publications by authors named "Luis Muniz-Rascado"

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The EcoCyc database (2025).
Peter D Karp, Suzanne Paley, Ron Caspi, Anamika Kothari, Markus Krummenacker

EcoSal Plus· December 2025

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Flexible gold standards for transcription factor regulatory interactions in K-12: architecture of evidence types.
Paloma Lara, Socorro Gama-Castro, Heladia Salgado, Claire Rioualen, Víctor H Tierrafría

Front Genet· March 2024

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RegulonDB v12.0: a comprehensive resource of transcriptional regulation in E. coli K-12.
Heladia Salgado, Socorro Gama-Castro, Paloma Lara, Citlalli Mejia-Almonte, Gabriel Alarcón-Carranza

Nucleic Acids Res· January 2024

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A Gold Standard for Transcription Factor Regulatory Interactions in K-12: Architecture of Evidence Types.
Paloma Lara, Socorro Gama-Castro, Heladia Salgado, Claire Rioualen, Víctor H Tierrafría

bioRxiv· December 2023

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The EcoCyc Database (2023).
Peter D Karp, Suzanne Paley, Ron Caspi, Anamika Kothari, Markus Krummenacker

EcoSal Plus· December 2023

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Sensory Systems and Transcriptional Regulation in .
Georgette Femerling, Socorro Gama-Castro, Paloma Lara, Daniela Ledezma-Tejeida, Víctor H Tierrafría

Front Bioeng Biotechnol· February 2022

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The EcoCyc Database in 2021.
Ingrid M Keseler, Socorro Gama-Castro, Amanda Mackie, Richard Billington, César Bonavides-Martínez

Front Microbiol· July 2021

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RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12.
Alberto Santos-Zavaleta, Heladia Salgado, Socorro Gama-Castro, Mishael Sánchez-Pérez, Laura Gómez-Romero

Nucleic Acids Res· January 2019

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The EcoCyc Database.
Peter D Karp, Wai Kit Ong, Suzanne Paley, Richard Billington, Ron Caspi

EcoSal Plus· November 2018

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The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.
Ingrid M Keseler, Amanda Mackie, Alberto Santos-Zavaleta, Richard Billington, César Bonavides-Martínez

Nucleic Acids Res· January 2017

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Strategies towards digital and semi-automated curation in RegulonDB.
Fabio Rinaldi, Oscar Lithgow, Socorro Gama-Castro, Hilda Solano, Alejandra Lopez

Database (Oxford)· January 2017

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Strategies towards digital and semi-automated curation in RegulonDB.
Fabio Rinaldi, Oscar Lithgow, Socorro Gama-Castro, Hilda Solano, Alejandra López-Fuentes

Database (Oxford)· January 2017

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RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond.
Socorro Gama-Castro, Heladia Salgado, Alberto Santos-Zavaleta, Daniela Ledezma-Tejeida, Luis Muñiz-Rascado

Nucleic Acids Res· January 2016

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The EcoCyc Database.
Peter D Karp, Daniel Weaver, Suzanne Paley, Carol Fulcher, Aya Kubo

EcoSal Plus· May 2014

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EcoCyc: fusing model organism databases with systems biology.
Ingrid M Keseler, Amanda Mackie, Martin Peralta-Gil, Alberto Santos-Zavaleta, Socorro Gama-Castro

Nucleic Acids Res· January 2013

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RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more.
Heladia Salgado, Martin Peralta-Gil, Socorro Gama-Castro, Alberto Santos-Zavaleta, Luis Muñiz-Rascado

Nucleic Acids Res· January 2013

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Extracting regulatory networks of Escherichia coli from RegulonDB.
Heladia Salgado, Irma Martínez-Flores, Alejandra López-Fuentes, Jair Santiago García-Sotelo, Liliana Porrón-Sotelo

Methods Mol Biol· March 2012

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RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units).
Socorro Gama-Castro, Heladia Salgado, Martin Peralta-Gil, Alberto Santos-Zavaleta, Luis Muñiz-Rascado

Nucleic Acids Res· January 2011

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EcoCyc: a comprehensive database of Escherichia coli biology.
Ingrid M Keseler, Julio Collado-Vides, Alberto Santos-Zavaleta, Martin Peralta-Gil, Socorro Gama-Castro

Nucleic Acids Res· January 2011

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Bioinformatics resources for the study of gene regulation in bacteria.
Julio Collado-Vides, Heladia Salgado, Enrique Morett, Socorro Gama-Castro, Verónica Jiménez-Jacinto

J Bacteriol· January 2009

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RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.
Socorro Gama-Castro, Verónica Jiménez-Jacinto, Martín Peralta-Gil, Alberto Santos-Zavaleta, Mónica I Peñaloza-Spinola

Nucleic Acids Res· January 2008

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