Publications by authors named "Luke Thompson"

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STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies.
Julia M Kelliher, Chloe Mirzayi, Sarah R Bordenstein, Aaron Oliver, Christina A Kellogg, Luke R Thompson

Nat Microbiol· December 2025

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Grove-First: A Generalizable Framework to Evaluate Translational Solutions to Citrus Greening and Other Perennial Crop Diseases.
Michelle L Heck, Nicholas Larson, Guilherme Locatelli, Ellen Cochrane, Samuel Coradetti, Luke Thompson

Plant Dis· October 2025

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Outcomes of Percutaneous Cholecystostomy in the Management of Acute Cholecystitis: A Retrospective Cohort Study at a Rural District General Hospital.
Michael Rimicans, Joshua Fultang, Luke Thompson, Krishna Oochit, Karthik Maruthachalam

Cureus· October 2025

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AmesFormer: State-of-the-Art Mutagenicity Prediction with Graph Transformers.
Luke A Thompson, Josiah G Evans, Slade T Matthews

Chem Res Toxicol· July 2025

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Microbiome data management in action workshop: Atlanta, GA, USA, June 12-13, 2024.
Julia M Kelliher, Mashael Aljumaah, Sarah R Bordenstein, J Rodney Brister, Patrick S G Chain, Luke R Thompson

Environ Microbiome· April 2025

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Characterisation of the octogenarians presenting to the diagnostic heart failure clinic: SHEAF registry.
Luke Thompson, Fiona Carr, Dominic Rogers, Nigel Lewis, Athanasios Charalampopoulos

Open Heart· April 2024

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Investigation of machine learning algorithms for taxonomic classification of marine metagenomes.
Helen Park, Shen Jean Lim, Jonathan Cosme, Kyle O'Connell, Jilla Sandeep, Luke R Thompson

Microbiol Spectr· October 2023

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Novel Use of the Penumbra CAT 12 Lightning Aspiration System for the Treatment of a Complex Thrombus.
Luke Thompson, Ali Alkhayru, Usman Ahmad, John Hughes, Ali Ebrahimi

Cardiovasc Revasc Med· August 2023

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Novel Application of Large Bore Aspiration in the Treatment of COVID-19 Associated Acute Limb Ischemia Using the Penumbra CAT 12 Lightning Aspiration System.
Ali Alkhayru, Luke Thompson, Marek Solomianko, Ali Ebrahimi, Ali Abdul Jabbar

Cardiovasc Revasc Med· August 2023

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Extraction Free RT-PCR Surveillance Testing and Reporting for SARS-CoV-2.
Patrick Carney, Tyler Duellman, Jia-Yi Chan, Lauren Wells, Michael Tessmer, Luke Thompson

COVID· July 2023

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Decoding dissolved information: environmental DNA sequencing at global scale to monitor a changing ocean.
Luke R Thompson, Peter Thielen

Curr Opin Biotechnol· June 2023

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Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity.
Justin P Shaffer, Louis-Félix Nothias, Luke R Thompson, Jon G Sanders, Rodolfo A Salido

Nat Microbiol· December 2022

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Dominance of in Metagenomes Associated with the Methane Ice Worm (Sirsoe methanicola).
Shen Jean Lim, Luke R Thompson, Craig M Young, Terry Gaasterland, Kelly D Goodwin

Appl Environ Microbiol· August 2022

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Tourmaline: A containerized workflow for rapid and iterable amplicon sequence analysis using QIIME 2 and Snakemake.
Luke R Thompson, Sean R Anderson, Paul A Den Uyl, Nastassia V Patin, Shen Jean Lim

Gigascience· July 2022

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MIxS-SA: a MIxS extension defining the minimum information standard for sequence data from symbiont-associated micro-organisms.
Fátima Jorge, Jaelle C Brealey, Paul J Brindley, Marie Buysse, Cinzia Cantacessi, Luke R Thompson

ISME Commun· February 2022

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Subsurface automated samplers for eDNA (SASe) for biological monitoring and research.
Nathan Formel, Ian C Enochs, Chris Sinigalliano, Sean R Anderson, Luke R Thompson

HardwareX· October 2021

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Correction for Vangay et al., "Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities".
Pajau Vangay, Josephine Burgin, Anjanette Johnston, Kristen L Beck, Daniel C Berrios, Luke R Thompson

mSystems· May 2021

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Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities.
Pajau Vangay, Josephine Burgin, Anjanette Johnston, Kristen L Beck, Daniel C Berrios, Luke R Thompson

mSystems· February 2021

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Two hundred and fifty-four metagenome-assembled bacterial genomes from the bank vole gut microbiota.
Anton Lavrinienko, Eugene Tukalenko, Timothy A Mousseau, Luke R Thompson, Rob Knight

Sci Data· September 2020

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MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities.
Liu Cao, Alexey Gurevich, Kelsey L Alexander, C Benjamin Naman, Tiago Leão, Luke R Thompson

Cell Syst· December 2019

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Parasite microbiome project: Grand challenges.
Nolwenn M Dheilly, Joaquín Martínez Martínez, Karyna Rosario, Paul J Brindley, Raina N Fichorova, Luke R Thompson

PLoS Pathog· October 2019

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Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Evan Bolyen, Jai Ram Rideout, Matthew R Dillon, Nicholas A Bokulich, Christian C Abnet, Luke R Thompson

Nat Biotechnol· September 2019

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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Evan Bolyen, Jai Ram Rideout, Matthew R Dillon, Nicholas A Bokulich, Christian C Abnet, Luke R Thompson

Nat Biotechnol· August 2019

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Red Sea SAR11 and Single-Cell Genomes Reflect Globally Distributed Pangenomes.
Luke R Thompson, Mohamed F Haroon, Ahmed A Shibl, Matt J Cahill, David K Ngugi

Appl Environ Microbiol· July 2019

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A Novel Sparse Compositional Technique Reveals Microbial Perturbations.
Cameron Martino, James T Morton, Clarisse A Marotz, Luke R Thompson, Anupriya Tripathi

mSystems· February 2019

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