Publications by authors named "MA Black"

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A set cover algorithm identifies minimal circulating tumour DNA sequencing targets for colorectal cancer detection.
Kit Moloney-Geany, Michael A Black, Robert C Day, Parry Guilford, Michael J Dunnet

Sci Rep· November 2025

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Beyond single references: pangenome graphs and the future of genomic medicine.
Denis M Nyaga, Roan E Zaied, Olin K Silander, Michael A Black, Justin M O'Sullivan

Front Genet· October 2025

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Evaluating computational tools for protein-coding sequence detection: Are they up to the task?
D J Champion, Ting-Hsuan Chen, Susan Thomson, Michael A Black, Paul P Gardner

RNA· August 2025

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Novel Double Fusion Underlying Crizotinib Resistance in a Metastatic Inflammatory Myofibroblastic Tumor: A Case Report.
Alessandra Maleddu, Trista K Hinz, Margaret A Black, Dara L Aisner, Carrie B Marshall

JTO Clin Res Rep· May 2025

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Aotearoa genomic data repository: An āhuru mōwai for taonga species sequencing data.
Ben Te Aika, Libby Liggins, Claire Rye, E Owen Perkins, Jun Huh, Michael A Black

Mol Ecol Resour· February 2025

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Construction of relatedness matrices in autopolyploid populations using low-depth high-throughput sequencing data.
Timothy P Bilton, Sanjeev Kumar Sharma, Matthew R Schofield, Michael A Black, Jeanne M E Jacobs

Theor Appl Genet· March 2024

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Restriction site associated DNA sequencing for tumour mutation burden estimation and mutation signature analysis.
Conor F McGuinness, Michael A Black, Anita K Dunbier

Cancer Med· December 2023

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RBFOX2 deregulation promotes pancreatic cancer progression and metastasis through alternative splicing.
Michelle Maurin, Mohammadreza Ranjouri, Cristina Megino-Luque, Justin Y Newberg, Dongliang Du, Michael A Black

Nat Commun· December 2023

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Genetic and Immunohistochemical Profiling of Mammary Hidradenoma and Comparison to Mucoepidermoid Carcinoma.
Margaret A Black, Neil M Neumann, Gregor Krings, Saleh Najjar, Megan L Troxell

Mod Pathol· October 2023

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Pangenome graphs in infectious disease: a comprehensive genetic variation analysis of leveraging Oxford Nanopore long reads.
Zuyu Yang, Andrea Guarracino, Patrick J Biggs, Michael A Black, Nuzla Ismail

Front Genet· August 2023

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Insights into HO-induced signaling in Jurkat cells from analysis of gene expression.
Megan F Taylor, Michael A Black, Mark B Hampton, Elizabeth C Ledgerwood

Free Radic Res· February 2023

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Impact of Clinical Data Veracity on Cancer Genomic Research.
Sunali Mehta, Deborah Wright, Michael A Black, Arend Merrie, Ahmad Anjomshoaa

JNCI Cancer Spectr· November 2022

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E-Cadherin-Deficient Cells Are Sensitive to the Multikinase Inhibitor Dasatinib.
Nicola Bougen-Zhukov, Lyvianne Decourtye-Espiard, Wilson Mitchell, Kieran Redpath, Jacqui Perkinson, Michael A Black

Cancers (Basel)· March 2022

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Sustained software development, not number of citations or journal choice, is indicative of accurate bioinformatic software.
Paul P Gardner, James M Paterson, Stephanie McGimpsey, Fatemeh Ashari-Ghomi, Sinan U Umu, Michael A Black

Genome Biol· February 2022

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Diagnosis of soft tissue tumors using immunohistochemistry as a surrogate for recurrent fusion oncoproteins.
Margaret A Black, Gregory W Charville

Semin Diagn Pathol· January 2022

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Bulk and Single-Cell Profiling of Breast Tumors Identifies TREM-1 as a Dominant Immune Suppressive Marker Associated With Poor Outcomes.
Ashok K Pullikuth, Eric D Routh, Kip D Zimmerman, Julia Chifman, Jeff W Chou, Michael A Black

Front Oncol· December 2021

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E-Cadherin-Deficient Epithelial Cells Are Sensitive to HDAC Inhibitors.
Lyvianne Decourtye-Espiard, Nicola Bougen-Zhukov, Tanis Godwin, Tom Brew, Emily Schulpen, Michael A Black

Cancers (Basel)· December 2021

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Increased gene expression variability in BRCA1-associated and basal-like breast tumours.
George A R Wiggins, Michael A Black, Anita Dunbier, Arthur E Morley-Bunker,

Breast Cancer Res Treat· September 2021

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Single-Cell RNA-Seq Reveals Heterogeneous lncRNA Expression in Xenografted Triple-Negative Breast Cancer Cells.
Holly R Pinkney, Michael A Black, Sarah D Diermeier

Biology (Basel)· September 2021

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Transposon mutagenesis identifies cooperating genetic drivers during keratinocyte transformation and cutaneous squamous cell carcinoma progression.
Aziz Aiderus, Justin Y Newberg, Liliana Guzman-Rojas, Ana M Contreras-Sandoval, Amanda L Meshey, Michael A Black

PLoS Genet· August 2021

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Nuclear expression of DDIT3 distinguishes high-grade myxoid liposarcoma from other round cell sarcomas.
Esther Baranov, Margaret A Black, Christopher D M Fletcher, Gregory W Charville, Jason L Hornick

Mod Pathol· July 2021

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Variable expression quantitative trait loci analysis of breast cancer risk variants.
George A R Wiggins, Michael A Black, Anita Dunbier, Tony R Merriman, John F Pearson

Sci Rep· March 2021

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Analytical performance of lateral flow immunoassay for SARS-CoV-2 exposure screening on venous and capillary blood samples.
Margaret A Black, Guomiao Shen, Xiaojun Feng, Wilfredo F Garcia Beltran, Yang Feng

J Immunol Methods· February 2021

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Circulating tumor DNA is a sensitive marker for routine monitoring of treatment response in advanced colorectal cancer.
Donghui Zou, Robert Day, Judy A Cocadiz, Sarah Parackal, Wilson Mitchell, Michael A Black

Carcinogenesis· November 2020

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Distinctive Subpopulations of Stromal Cells Are Present in Human Lymph Nodes Infiltrated with Melanoma.
Jennifer Eom, Saem Mul Park, Vaughan Feisst, Chun-Jen J Chen, Joanna E Mathy, Michael A Black

Cancer Immunol Res· August 2020

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